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Sample GSM42532 Query DataSets for GSM42532
Status Public on Oct 04, 2005
Title Amoxicillin treated Colon 3 17 days old
Sample type RNA
 
Source name Colon 17 days old
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description Whole tissues corresponding to the proximal and distal small intestine and to the colon were dissected from each rat, washed with ice-cold saline solution and immediately frozen in liquid nitrogen. Rats were either control or treated with Amoxicillin (100mg/kg/day). Small intestine was divided in two identical length considered as the proximal and distal part. In each intestinal part 1 cm of tissue was taken in the middle of this part to perform the RNA extraction and then the GeneArray analysis.
Keywords = gastrointestinal tract, microarray, antibiotic, suckling rats, amoxicillin
 
Submission date Feb 17, 2005
Last update date Oct 04, 2005
Contact name Alexandra Schumann
E-mail(s) [email protected]
Phone + 41 21 785 93 39
Fax + 41 21 785 85 44
Organization name Nestle Research Center
Department Nutrition and Health
Lab Digestive Health
Street address PO box 44
City Vers-chez-les-Blancs
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL341
Series (1)
GSE2354 Effect of Amoxicillin on the small intestine and colon of rats

Data table header descriptions
ID_REF
VALUE MAS5 scaled ADI
LOG log 2 normalized ADI

Data table
ID_REF VALUE LOG
AFFX-BioB-5_at 50.8 5.574956704
AFFX-DapX-5_at 18.7 4.240210907
1398787_at 1356.7 10.51036996
1367863_at 171.2 7.364796491
1374210_at 217.1 7.73312579
1374211_at 24.8 4.594113593
1374212_at 92.9 6.449442046
1389463_at 88.6 6.38752833
1389464_at 108.2 6.669798814
1374213_at 108.3 6.714906342
1374214_at 149.2 7.161180893
1389465_at 281.8 8.134393915
1374215_at 243.1 7.927124276
1374216_at 137.3 7.053703814
1367864_at 247.3 7.92511416
1389466_at 399.8 8.67318536
1374217_at 71.8 6.105879327
1374218_at 24.4 4.52807351
1389467_at 66.4 5.965576979
1374219_at 21.9 4.414036666

Total number of rows: 15918

Table truncated, full table size 440 Kbytes.




Supplementary data files not provided

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