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Sample GSM42528 Query DataSets for GSM42528
Status Public on Oct 04, 2005
Title Amoxicillin treated Colon 1 21 days old
Sample type RNA
 
Source name Colon 21 days old
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description Whole tissues corresponding to the proximal and distal small intestine and to the colon were dissected from each rat, washed with ice-cold saline solution and immediately frozen in liquid nitrogen. Rats were either control or treated with Amoxicillin (100mg/kg/day). Small intestine was divided in two identical length considered as the proximal and distal part. In each intestinal part 1 cm of tissue was taken in the middle of this part to perform the RNA extraction and then the GeneArray analysis.
Keywords = gastrointestinal tract, microarray, antibiotic, suckling rats, amoxicillin
 
Submission date Feb 17, 2005
Last update date Oct 04, 2005
Contact name Alexandra Schumann
E-mail(s) [email protected]
Phone + 41 21 785 93 39
Fax + 41 21 785 85 44
Organization name Nestle Research Center
Department Nutrition and Health
Lab Digestive Health
Street address PO box 44
City Vers-chez-les-Blancs
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL341
Series (1)
GSE2354 Effect of Amoxicillin on the small intestine and colon of rats

Data table header descriptions
ID_REF
VALUE MAS5 scaled ADI
LOG log 2 normalized ADI

Data table
ID_REF VALUE LOG
AFFX-BioB-5_at 83 6.27937382
AFFX-DapX-5_at 24.5 4.493743728
1398787_at 1033.2 10.07186535
1367863_at 208.9 7.670876416
1374210_at 234.6 7.863081011
1374211_at 5.1 2.228867845
1374212_at 92.1 6.444117699
1389463_at 105.1 6.646563973
1389464_at 122 6.822880718
1374213_at 114 6.807966484
1374214_at 127.1 6.948474454
1389465_at 316.1 8.314580595
1374215_at 269.3 8.088109213
1374216_at 124.1 6.926984754
1367864_at 205.7 7.6770686
1389466_at 399 8.676539787
1374217_at 26.3 4.675524712
1374218_at 36.8 5.088090387
1389467_at 65.1 5.944980437
1374219_at 7.6 2.804394103

Total number of rows: 15918

Table truncated, full table size 439 Kbytes.




Supplementary data files not provided

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