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Sample GSM41906 Query DataSets for GSM41906
Status Public on Feb 10, 2006
Title R80A_6h:Blank_6h - mAdb ID 51479
Sample type RNA
 
Channel 1
Source name Blank_6h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name R80A_6h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 51479
Flp-In TREx 293 cells stably transfected with R80A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 8 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.1p13-061803
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 6
SAMPLE: R80A_6h:Blank_6h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) [email protected]
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -1.261 0.417 1 1 1 285 109 103 56 676 160 175 57 0 -1.261
1174364_1 0.207 1.154 1 1 2 3140 785 104 56 3195 548 173 59 0 0.207
1175152_1 -0.983 0.506 1 1 3 260 122 105 56 532 171 180 102 0 -0.983
1175940_1 -0.020 0.986 1 1 4 1149 306 114 63 1412 353 206 75 0 -0.020
1176716_1 0.250 1.190 1 1 5 2662 449 114 53 2649 382 188 64 0 0.250
1177504_1 0.599 1.515 1 1 6 2321 426 107 53 1855 367 176 56 0 0.599
1178580_1 0.394 1.314 1 1 7 2222 538 111 51 2028 483 182 54 0 0.394
1179356_1 -1.320 0.400 1 1 8 193 82 109 50 423 99 182 54 0 -1.320
1180144_1 0.536 1.450 1 1 9 2834 718 110 46 2335 477 176 56 0 0.536
1180932_1 -0.917 0.530 1 1 10 243 129 107 52 472 121 177 48 0 -0.917
1181708_1 0.090 1.064 1 1 11 767 317 101 49 892 248 173 50 0 0.090
1182496_1 -1.753 0.297 1 1 12 158 65 103 45 392 80 179 49 0 -1.753
1183572_1 1.149 1 1 13 102 44 105 44 166 47 169 44 -50 0.200
1184348_1 -0.314 0.804 1 1 14 328 146 104 62 491 178 171 49 0 -0.314
1185136_1 -0.443 0.735 1 1 15 453 117 108 52 707 156 168 45 0 -0.443
1185924_1 -0.701 0.615 1 1 16 231 100 102 49 409 110 168 48 0 -0.701
1186700_1 0.734 1.663 1 1 17 1591 444 107 46 1197 296 172 53 0 0.734
1187488_1 -0.126 0.916 1 1 18 549 213 108 51 718 216 165 50 0 -0.126
1188564_1 0.940 1 1 19 105 44 96 48 171 47 160 45 -50 -0.089
1189340_1 -0.326 0.798 1 1 20 437 187 96 47 652 225 161 55 0 -0.326

Total number of rows: 21794

Table truncated, full table size 1483 Kbytes.




Supplementary data files not provided
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