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Sample GSM41884 Query DataSets for GSM41884
Status Public on Feb 10, 2006
Title R80A_8h:Blank_8h - mAdb ID 56142
Sample type RNA
 
Channel 1
Source name Blank_8h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name R80A_8h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 56142
Flp-In TREx 293 cells stably transfected with R80A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 8 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.3p08-032904
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 8
SAMPLE: R80A_8h:Blank_8h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) [email protected]
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -1.505 0.352 1 1 1 503 178 72 38 1322 404 67 27 0 -1.505
1174364_1 -0.234 0.850 1 1 2 7353 2253 74 114 8851 3320 70 195 0 -0.234
1175152_1 -1.002 0.499 1 1 3 671 341 82 4990 1298 578 88 11971 0 -1.002
1175940_1 0.026 1.018 1 1 4 1270 291 86 4119 1274 312 81 12222 0 0.026
1176716_1 -0.365 0.776 1 1 5 4553 1482 76 47 5983 1963 69 47 0 -0.365
1177504_1 0.517 1.431 1 1 6 1193 653 74 40 871 314 69 40 0 0.517
1178580_1 -0.108 0.928 1 1 7 7889 3225 76 44 8706 2683 69 32 0 -0.108
1179356_1 -0.446 0.734 1 1 8 309 110 75 40 397 155 70 33 0 -0.446
1180144_1 -0.450 0.732 1 1 9 1373 328 71 35 1892 418 68 85 0 -0.450
1180932_1 -0.591 0.664 1 1 10 634 240 74 39 931 262 66 91 0 -0.591
1181708_1 -0.047 0.968 1 1 11 661 257 71 38 691 263 66 33 0 -0.047
1182496_1 -0.990 0.503 1 1 12 421 176 75 38 774 340 69 31 0 -0.990
1183572_1 -0.180 0.883 1 1 13 2475 602 72 43 2862 732 70 60 0 -0.180
1184348_1 -0.419 0.748 1 1 14 401 179 72 41 522 209 71 60 0 -0.419
1185136_1 -0.476 0.719 1 1 15 206 114 84 50 248 146 74 47 0 -0.476
1185924_1 -0.806 0.572 1 1 16 452 150 75 342 745 349 69 1227 0 -0.806
1186700_1 0.012 1.008 1 1 17 1452 460 75 63 1469 399 68 29 0 0.012
1187488_1 -0.601 0.659 1 1 18 670 249 74 35 995 357 68 25 0 -0.601
1188564_1 0.261 1.198 1 1 19 1209 446 71 35 1042 520 68 34 0 0.261
1189340_1 -0.557 0.680 1 1 20 1375 674 70 33 2038 1000 69 39 0 -0.557

Total number of rows: 21794

Table truncated, full table size 1466 Kbytes.




Supplementary data files not provided
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