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Sample GSM41873 Query DataSets for GSM41873
Status Public on Feb 10, 2006
Title R80A_4h:Blank_4h - mAdb ID 56140
Sample type RNA
 
Channel 1
Source name Blank_4h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name R80A_4h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 56140
Flp-In TREx 293 cells stably transfected with R80A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 4 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.3p08-032904
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 4
SAMPLE: R80A_4h:Blank_4h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) [email protected]
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.568 0.675 1 1 1 283 134 83 38 382 195 84 44 0 -0.568
1174364_1 0.015 1.011 1 1 2 7759 3537 81 39 7719 3559 81 29 0 0.015
1175152_1 -0.478 0.718 1 1 3 635 260 80 35 861 474 84 30 0 -0.478
1175940_1 -0.124 0.918 1 1 4 692 189 83 36 751 204 84 30 0 -0.124
1176716_1 -0.131 0.913 1 1 5 4840 1377 90 42 5316 1617 87 30 0 -0.131
1177504_1 0.700 1.624 1 1 6 1276 467 87 38 824 338 88 36 0 0.700
1178580_1 0.282 1.216 1 1 7 4646 6159 87 44 3855 1255 86 50 0 0.282
1179356_1 -0.455 0.730 1 1 8 177 86 87 38 211 84 87 31 0 -0.455
1180144_1 0.178 1.131 1 1 9 1173 385 87 54 1056 297 91 44 0 0.178
1180932_1 -0.583 0.667 1 1 10 245 152 87 45 329 160 91 42 0 -0.583
1181708_1 0.417 1.335 1 1 11 587 215 85 48 464 200 86 42 0 0.417
1182496_1 -0.273 0.828 1 1 12 205 87 84 51 232 126 85 46 0 -0.273
1183572_1 0.021 1.015 1 1 13 1248 331 86 39 1235 279 84 34 0 0.021
1184348_1 0.118 1.085 1 1 14 265 115 88 44 253 95 89 30 0 0.118
1185136_1 0.418 1.336 1 1 15 310 234 84 40 261 126 91 33 0 0.418
1185924_1 -0.412 0.752 1 1 16 258 90 89 34 313 162 87 27 0 -0.412
1186700_1 0.210 1.157 1 1 17 749 249 93 36 655 224 85 27 0 0.210
1187488_1 -0.615 0.653 1 1 18 317 100 91 41 436 141 88 30 0 -0.615
1188564_1 0.440 1.357 1 1 19 1139 405 89 39 868 275 90 33 0 0.440
1189340_1 -0.199 0.871 1 1 20 730 249 93 40 825 308 90 30 0 -0.199

Total number of rows: 21794

Table truncated, full table size 1486 Kbytes.




Supplementary data files not provided
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