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GEO accession:
Sample GSM412187
Query DataSets for GSM412187
Status
Public on Apr 12, 2010
Title
N2_2
Sample type
RNA
Source name
wild-type, N2_2
Organism
Caenorhabditis elegans
Characteristics
strain: wild-type, N2
Extracted molecule
total RNA
Extraction protocol
TRIZOL following RNA extraction with chloroform and isopropanol
Label
biotin
Label protocol
GeneChip eukaryotic target labeling kit
Hybridization protocol
hybridization protocol recommended by Affymetrix
Scan protocol
scanning protocol recommended by Affymetrix
Description
N2_2
Data processing
dChip was used for the processing of the data. The invariant set normalization method was used.
Submission date
Jun 03, 2009
Last update date
Nov 30, 2009
Contact name
Jessica Margareta Lindvall
E-mail(s)
[email protected]
Organization name
University of Oslo
Street address
Gaustadallee 24
City
Oslo
ZIP/Postal code
0176
Country
Norway
Platform ID
GPL200
Series (1)
GSE16405
Transcriptional changes in the absence of nth-1, xpa-1 and nth-1;xpa-1
Data table header descriptions
ID_REF
VALUE
log-2 normalized signal (dChip)
ABS_CALL
Data table
ID_REF
VALUE
ABS_CALL
AFFX-BioB-5_at
8.16
P
AFFX-BioB-M_at
8.94
P
AFFX-BioB-3_at
8.8
P
AFFX-BioC-5_at
9.38
P
AFFX-BioC-3_at
10.12
P
AFFX-BioDn-5_at
10.43
P
AFFX-BioDn-3_at
12.02
P
AFFX-CreX-5_at
12.64
P
AFFX-CreX-3_at
12.74
P
AFFX-DapX-5_at
6.87
P
AFFX-DapX-M_at
9.39
P
AFFX-DapX-3_at
10.24
P
AFFX-LysX-5_at
4.4
A
AFFX-LysX-M_at
6.79
A
AFFX-LysX-3_at
8.64
P
AFFX-PheX-5_at
5
A
AFFX-PheX-M_at
6.46
A
AFFX-PheX-3_at
8.51
P
AFFX-ThrX-5_at
7.16
A
AFFX-ThrX-M_at
7.74
A
Total number of rows:
22625
Table truncated, full table size
391 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM412187.CEL.gz
2.2 Mb
(ftp)
(http)
CEL
GSM412187.CHP.gz
122.1 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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