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Sample GSM410915 Query DataSets for GSM410915
Status Public on Jun 08, 2009
Title HeLa cells treated for 6 h
Sample type RNA
 
Source name HeLa cells
Organism Homo sapiens
Characteristics agent: MT7
time: 6 h
Treatment protocol HeLa cells treated with 5 mM MT7 for 0(control), 1.5(Time1), 3(Time2), 6(Time3) and 12(Time4) hours, respectively, were then washed three times with PBS and the total RNA was isolated and processed for Affymetrix U133A 2.0 hybridizations.
Growth protocol HeLa cells were grown in RPMI1640 plus 10% fetal bovine serum as the supplier's instruction
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using QIAGEN RNeasy Mini Kit according to the manufacturer's instructions.
Label biotin
Label protocol Standard Affymetrix protocol.
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description Gene expression data from embryos in slow phase of cellularisation.
Data processing The data were analyzed with GCOS software
 
Submission date Jun 02, 2009
Last update date Jun 07, 2009
Contact name Zhixiang Zhang
E-mail(s) [email protected]
Organization name SIMM
Street address Rd. Zuchongzhi
City Shanghai
ZIP/Postal code 201203
Country China
 
Platform ID GPL571
Series (1)
GSE16378 The kinetics of gene expressions of HeLa cells treated with MT7

Data table header descriptions
ID_REF
VALUE GCOS-processed signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 372.3 P 0.001354
1053_at 1682.3 P 0.000266
117_at 15 A 0.107301
121_at 121 P 0.013092
1255_g_at 9.8 A 0.52062
1294_at 31 A 0.081337
1316_at 31.4 P 0.006532
1320_at 21.4 A 0.218983
1405_i_at 149.9 P 0.000613
1431_at 11.7 A 0.339558
1438_at 2.4 A 0.837065
1487_at 320.9 P 0.006532
1494_f_at 2.3 A 0.910595
1598_g_at 54.7 A 0.175989
160020_at 67.4 P 0.002228
1729_at 181.7 P 0.000266
1773_at 193.5 P 0.002228
177_at 81.1 P 0.000673
179_at 29.4 A 0.32083
1861_at 117.7 P 0.000322

Total number of rows: 22215

Table truncated, full table size 584 Kbytes.




Supplementary file Size Download File type/resource
GSM410915.CEL.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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