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GEO accession:
Sample GSM40555
Query DataSets for GSM40555
Status
Public on May 31, 2005
Title
Polysomal mRNA - Hypoxia stress
Sample type
RNA
Source name
7d-old WT ler seedlings submitted to 12h hypoxia
Organism
Arabidopsis thaliana
Extracted molecule
total RNA
Description
Large Polysome mRNA extracted from 7-d old seedlings, treated for hypoxia under low light (45uM m-2 s-2) conditions for 12h.
Submission date
Jan 31, 2005
Last update date
Aug 28, 2018
Contact name
Cristina Branco-Price
E-mail(s)
[email protected]
Phone
951 827 6276
Fax
951 827 4437
Organization name
University of California, Riverside
Department
Botany and Plant Sciences
Lab
Julia Bailey-Serres
Street address
2215 batchelor Hall
City
Riverside
State/province
CA
ZIP/Postal code
92521
Country
USA
Platform ID
GPL198
Series (1)
GSE2218
Changes in transcript abundance and association with large polysomes in response to hypoxia stress
Relations
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
Stat Pairs
Number of probe pairs for each gene on the chip
Stat Pairs Used
Number of probe pairs used to quantify signal intensity for each gene
VALUE
Fluorescence intensity corresponding to transcript abundance (signal)
ABS_CALL
Present (P), absent (A) or marginal, for signal intensities above, below or on (respectively) the detection threshold (MAS 5.0 software default)
DETECTION P-VALUE
statistical value that validates detection call
Data table
ID_REF
Stat Pairs
Stat Pairs Used
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
20
20
229.3
P
0.003592
AFFX-BioB-M_at
20
20
348.2
P
0.000044
AFFX-BioB-3_at
20
20
189.7
P
0.000147
AFFX-BioC-5_at
20
20
676.9
P
0.00011
AFFX-BioC-3_at
20
20
396.4
P
0.00007
AFFX-BioDn-5_at
20
20
563.6
P
0.000044
AFFX-BioDn-3_at
20
20
2550.8
P
0.000052
AFFX-CreX-5_at
20
20
6199.5
P
0.000044
AFFX-CreX-3_at
20
20
8000.2
P
0.000044
AFFX-DapX-5_at
20
20
10.7
A
0.287743
AFFX-DapX-M_at
20
20
13.7
A
0.52976
AFFX-DapX-3_at
20
20
3.8
A
0.981719
AFFX-LysX-5_at
20
20
1.1
A
0.824672
AFFX-LysX-M_at
20
20
8.5
A
0.843268
AFFX-LysX-3_at
20
20
13.5
A
0.368438
AFFX-PheX-5_at
20
20
2.9
A
0.876428
AFFX-PheX-M_at
20
20
2.2
A
0.824672
AFFX-PheX-3_at
20
20
8.4
A
0.712257
AFFX-ThrX-5_at
20
20
6.5
A
0.58862
AFFX-ThrX-M_at
20
20
8.3
A
0.645547
Total number of rows:
22810
Table truncated, full table size
722 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM40555.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
GSM40555.EXP.gz
505 b
(ftp)
(http)
EXP
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