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GEO accession:
Sample GSM40554
Query DataSets for GSM40554
Status
Public on May 31, 2005
Title
Polysomal mRNA, non-stress
Sample type
RNA
Source name
7d-old WT ler seedlings
Organism
Arabidopsis thaliana
Extracted molecule
total RNA
Description
Large Polysome mRNA extracted from 7-d old seedlings, treated with low light (45uM m-2 s-2) conditions for 12h.
Submission date
Jan 31, 2005
Last update date
Aug 28, 2018
Contact name
Cristina Branco-Price
E-mail(s)
[email protected]
Phone
951 827 6276
Fax
951 827 4437
Organization name
University of California, Riverside
Department
Botany and Plant Sciences
Lab
Julia Bailey-Serres
Street address
2215 batchelor Hall
City
Riverside
State/province
CA
ZIP/Postal code
92521
Country
USA
Platform ID
GPL198
Series (1)
GSE2218
Changes in transcript abundance and association with large polysomes in response to hypoxia stress
Relations
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
Stat Pairs
number of probe pairs for each gene on the chip
Stat Pairs Used
number of probe pairs used to quantify signal intensity for each gene
VALUE
fluorescence intensity corresponding to abundance of transcript (signal)
ABS_CALL
Present (P), absent (A) or marginal (M) for signals that are above, below or on the detection threshold (respectively) (MAS 5.0 software default)
DETECTION P-VALUE
statistical value that validates detection call
Data table
ID_REF
Stat Pairs
Stat Pairs Used
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
20
20
230.1
P
0.004017
AFFX-BioB-M_at
20
20
238.7
P
0.000052
AFFX-BioB-3_at
20
20
165.8
P
0.000297
AFFX-BioC-5_at
20
20
631.2
P
0.000095
AFFX-BioC-3_at
20
20
302.2
P
0.00006
AFFX-BioDn-5_at
20
20
383.3
P
0.000044
AFFX-BioDn-3_at
20
20
2022.1
P
0.000044
AFFX-CreX-5_at
20
20
4257.4
P
0.000044
AFFX-CreX-3_at
20
20
6634.6
P
0.000044
AFFX-DapX-5_at
20
20
14.8
A
0.216524
AFFX-DapX-M_at
20
20
16.8
A
0.455413
AFFX-DapX-3_at
20
20
3.2
A
0.945787
AFFX-LysX-5_at
20
20
1.9
A
0.804734
AFFX-LysX-M_at
20
20
5.8
A
0.904333
AFFX-LysX-3_at
20
20
1.1
A
0.48511
AFFX-PheX-5_at
20
20
1.9
A
0.976071
AFFX-PheX-M_at
20
20
2.6
A
0.891021
AFFX-PheX-3_at
20
20
16.8
A
0.52976
AFFX-ThrX-5_at
20
20
2.5
A
0.876428
AFFX-ThrX-M_at
20
20
3.1
A
0.794268
Total number of rows:
22810
Table truncated, full table size
723 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM40554.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
GSM40554.EXP.gz
505 b
(ftp)
(http)
EXP
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