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Sample GSM402657 Query DataSets for GSM402657
Status Public on Sep 08, 2009
Title Saos-2 parental cells replicate 3
Sample type RNA
 
Source name Saos-2 parental cells
Organism Homo sapiens
Characteristics cell line: Saos-2
cell type: osteosarcoma
methotrexate sensitivity: sensitive
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit from Qiagen
Label biotin
Label protocol Affymetrix protocol for HG U133 PLUS 2.0
 
Hybridization protocol Affymetrix protocol for HG U133 PLUS 2.0
Scan protocol Affymetrix protocol for HG U133 PLUS 2.0
Description Gene expression profile of Saos-2 parental cells sensitive to methotrexate.
Data processing Value generated using MAS 5.0 non-scaled
 
Submission date May 13, 2009
Last update date Jun 18, 2009
Contact name Carlos J Ciudad
E-mail(s) [email protected]
Phone +34-93-403-4455
Organization name University of Barcelona
Department Biochemistry and Molecular Biology
Lab School of Pharmacy
Street address Av. Juan XXIII-27
City Barcelona
State/province Barcelona
ZIP/Postal code 08028
Country Spain
 
Platform ID GPL570
Series (2)
GSE16089 Networking of differentially expressed genes in human Saos-2 osteosarcoma cells resistant to methotrexate
GSE16648 Networking of differentially expressed genes in human cancer cell lines resistant to methotrexate

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL Present or absent
Detection p-value Detection p-value

Data table
ID_REF VALUE ABS_CALL Detection p-value
AFFX-BioB-5_at 146.8 P 0.000581
AFFX-BioB-M_at 240.5 P 0.000044
AFFX-BioB-3_at 156.5 P 0.000052
AFFX-BioC-5_at 442.6 P 0.000052
AFFX-BioC-3_at 574.3 P 0.000044
AFFX-BioDn-5_at 1179.9 P 0.000044
AFFX-BioDn-3_at 2356.2 P 0.000052
AFFX-CreX-5_at 5118.6 P 0.000052
AFFX-CreX-3_at 6740.8 P 0.000044
AFFX-DapX-5_at 7.3 A 0.227636
AFFX-DapX-M_at 9.4 A 0.205732
AFFX-DapX-3_at 3.9 A 0.574038
AFFX-LysX-5_at 3.6 A 0.52977
AFFX-LysX-M_at 1.8 A 0.57407
AFFX-LysX-3_at 6 P 0.015175
AFFX-PheX-5_at 1 A 0.645559
AFFX-PheX-M_at 0.5 A 0.971543
AFFX-PheX-3_at 2.2 A 0.712257
AFFX-ThrX-5_at 1.2 A 0.783476
AFFX-ThrX-M_at 4.6 A 0.382599

Total number of rows: 54675

Table truncated, full table size 1401 Kbytes.




Supplementary file Size Download File type/resource
GSM402657.CEL.gz 7.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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