NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM402417 Query DataSets for GSM402417
Status Public on Sep 08, 2009
Title MCF7 parental cells replicate 1
Sample type RNA
 
Source name MCF7 parental cells
Organism Homo sapiens
Characteristics cell line: MCF7
cell type: breast cancer
methotrexate sensitivity: sensitive
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit from Qiagen
Label biotin
Label protocol Affymetrix protocol for HG U133 PLUS 2.0
 
Hybridization protocol Affymetrix protocol for HG U133 PLUS 2.0
Scan protocol Affymetrix protocol for HG U133 PLUS 2.0
Description Gene expression profile of MCF7 cells sensitive to methotrexate.
Data processing Value generated using MAS 5.0 non-scaled
 
Submission date May 12, 2009
Last update date Jun 18, 2009
Contact name Carlos J Ciudad
E-mail(s) [email protected]
Phone +34-93-403-4455
Organization name University of Barcelona
Department Biochemistry and Molecular Biology
Lab School of Pharmacy
Street address Av. Juan XXIII-27
City Barcelona
State/province Barcelona
ZIP/Postal code 08028
Country Spain
 
Platform ID GPL570
Series (2)
GSE16070 Networking of differentially expressed genes in human MCF7 breast cancer cells resistant to methotrexate
GSE16648 Networking of differentially expressed genes in human cancer cell lines resistant to methotrexate

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL present or absent
Detection p-value detection p-value

Data table
ID_REF VALUE ABS_CALL Detection p-value
AFFX-BioB-5_at 108.9 P 0.000258
AFFX-BioB-M_at 161.1 P 0.000052
AFFX-BioB-3_at 93.2 P 0.00006
AFFX-BioC-5_at 298.6 P 0.000044
AFFX-BioC-3_at 394.2 P 0.000052
AFFX-BioDn-5_at 770 P 0.000044
AFFX-BioDn-3_at 1554.5 P 0.000052
AFFX-CreX-5_at 3404.4 P 0.000044
AFFX-CreX-3_at 4577.7 P 0.000044
AFFX-DapX-5_at 0.3 A 0.990663
AFFX-DapX-M_at 7.2 A 0.340661
AFFX-DapX-3_at 1.2 A 0.910522
AFFX-LysX-5_at 5.6 A 0.300606
AFFX-LysX-M_at 7.7 A 0.52976
AFFX-LysX-3_at 2 A 0.794288
AFFX-PheX-5_at 0.3 A 0.999028
AFFX-PheX-M_at 1.1 A 0.852145
AFFX-PheX-3_at 2.2 A 0.737173
AFFX-ThrX-5_at 0.8 A 0.953518
AFFX-ThrX-M_at 0.6 A 0.949771

Total number of rows: 54675

Table truncated, full table size 1398 Kbytes.




Supplementary file Size Download File type/resource
GSM402417.CEL.gz 7.8 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap