NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM402378 Query DataSets for GSM402378
Status Public on Sep 08, 2009
Title Caco2 Resistant cells replicate 1
Sample type RNA
 
Source name Caco2 methotrexate-resistant cells
Organism Homo sapiens
Characteristics cell line: Caco2
cell type: colon cancer
methotrexate sensitivity: resistant
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit from Qiagen
Label biotin
Label protocol Affymetrix protocol for HG U133 plus 2.0
 
Hybridization protocol Affymetrix protocol for HG U133 plus 2.0
Scan protocol Affymetrix protocol for HG U133 plus 2.0
Description Gene expression profile of Caco2 cells resistant to 10e-5M methotrexate.
Data processing Value generated using MAS 5.0 non-scaled
 
Submission date May 12, 2009
Last update date Jun 18, 2009
Contact name Carlos J Ciudad
E-mail(s) [email protected]
Phone +34-93-403-4455
Organization name University of Barcelona
Department Biochemistry and Molecular Biology
Lab School of Pharmacy
Street address Av. Juan XXIII-27
City Barcelona
State/province Barcelona
ZIP/Postal code 08028
Country Spain
 
Platform ID GPL570
Series (2)
GSE16066 Networking of differentially expressed genes in CaCo2 human colon cancer cells resistant to methotrexate
GSE16648 Networking of differentially expressed genes in human cancer cell lines resistant to methotrexate

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal

Data table
ID_REF VALUE
AFFX-BioB-5_at 134.8
AFFX-BioB-M_at 217.1
AFFX-BioB-3_at 131.5
AFFX-BioC-5_at 452.9
AFFX-BioC-3_at 539.3
AFFX-BioDn-5_at 955.8
AFFX-BioDn-3_at 1431.4
AFFX-CreX-5_at 5076
AFFX-CreX-3_at 5589.3
AFFX-DapX-5_at 2.2
AFFX-DapX-M_at 4.7
AFFX-DapX-3_at 10.7
AFFX-LysX-5_at 0.5
AFFX-LysX-M_at 6.3
AFFX-LysX-3_at 1.9
AFFX-PheX-5_at 0.9
AFFX-PheX-M_at 1.1
AFFX-PheX-3_at 10.1
AFFX-ThrX-5_at 1.1
AFFX-ThrX-M_at 0.7

Total number of rows: 54675

Table truncated, full table size 820 Kbytes.




Supplementary file Size Download File type/resource
GSM402378.CEL.gz 7.6 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap