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Status
Public on Jan 10, 2005
Title
AIR EXPERIMENT 1
Sample type
RNA
Source name
4 days old, dark grown seedlings
Organism
Arabidopsis thaliana Extracted molecule
total RNA
Description
Arabidopsis thaliana ecotype Columbia glabra were grown for 4 days in the dark at 23°C in multiwell plates containing half-strenght murashige skoog medium without added sucrose. Sample was subsequently kept for 6h under the same conditions (aerobic) RNA was extracted using a Ambion RNaqueous kit. Targets were produced using standard Affymetrix procedures from about 10ug of total RNA. Each independent experiment consisted of four replicated seedlings cultures, pooled after RNA extraction.
Submission date
Jan 07, 2005
Last update date
Aug 28, 2018
Contact name
Pierdomenico Perata
E-mail(s)
[email protected] Phone
+39050881901
Organization name
Sant'Anna School of Advanced Studies
Department
Institute of Life Sciences
Lab
PlantLab
Street address
Via Guidiccioni 8-10
City
San Giuliano Terme
State/province
Pisa
ZIP/Postal code
56010
Country
Italy
Platform ID
GPL198 Series (2)
GSE2133 Effects of anoxia and sucrose on seedling growth
GSE3704 Effects of a 6h-long treatment with 90 mM sucrose to 4-d old, dark grown Arabidopsis seedlings
Relations Reanalyzed by
GSE119083
Data table header descriptions ID_REF
VALUE 'signal' a measure of the abundance of a transcript (not scaled)
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
122.4
P
0.000195
AFFX-BioB-M_at
144.1
P
0.000044
AFFX-BioB-3_at
125.4
P
0.000095
AFFX-BioC-5_at
256.1
P
0.000044
AFFX-BioC-3_at
126.5
P
0.00006
AFFX-BioDn-5_at
266.9
P
0.000044
AFFX-BioDn-3_at
938.8
P
0.000044
AFFX-CreX-5_at
2317.4
P
0.000044
AFFX-CreX-3_at
2854.6
P
0.000044
AFFX-DapX-5_at
2.6
A
0.39692
AFFX-DapX-M_at
6.2
A
0.368438
AFFX-DapX-3_at
0.4
A
0.957038
AFFX-LysX-5_at
0.5
A
0.834139
AFFX-LysX-M_at
1.3
A
0.910522
AFFX-LysX-3_at
5.7
A
0.216524
AFFX-PheX-5_at
0.9
A
0.876428
AFFX-PheX-M_at
0.4
A
0.969024
AFFX-PheX-3_at
5.4
A
0.250796
AFFX-ThrX-5_at
0.8
A
0.772364
AFFX-ThrX-M_at
3.1
A
0.794268
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