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Sample GSM3809 Query DataSets for GSM3809
Status Public on Jan 29, 2003
Title RH_TH3_negB
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4-CD8-
Replicate number: 3 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 6 3 19 19 17 0.32 1.18 0 0 2.0 51 A
IL10_at 7 6 20 20 19 0.35 0.97 0 0 1.2 299 A
GMCSF_at 6 6 20 20 19 0.30 0.29 0 0 1.0 -41 A
TNFRII_at 10 2 20 20 18 0.50 1.79 0 0 5.0 396 P
MIP1-B_at 8 3 20 20 19 0.40 1.24 1 0 2.7 784 A
IL4_at 7 5 20 20 18 0.35 0.99 1 0 1.4 90 A
IL12_P40_at 9 6 20 20 17 0.45 0.84 1 0 1.5 -121 A
TNFa_at 7 5 20 20 18 0.35 0.26 0 0 1.4 -25 A
TCRa_at 3 7 20 20 18 0.15 -1.17 0 0 0.4 -729 A
AFFX-BioB-5_at 10 5 20 20 18 0.50 1.45 0 0 2.0 438 A
AFFX-BioB-M_at 8 2 20 20 19 0.40 0.76 0 0 4.0 43 A
AFFX-BioB-3_at 7 4 20 20 20 0.35 0.90 1 0 1.8 325 A
AFFX-BioC-5_at 16 2 20 20 19 0.80 4.18 1 0 8.0 1669 P
AFFX-BioC-3_at 11 2 20 20 19 0.55 2.31 0 0 5.5 1120 P
AFFX-BioDn-5_at 15 1 20 20 19 0.75 4.29 2 0 15.0 1926 P
AFFX-BioDn-3_at 16 0 20 20 20 0.80 5.12 3 0 Undef 12264 P
AFFX-CreX-5_at 20 0 20 20 20 1.00 7.90 8 0 Undef 19335 P
AFFX-CreX-3_at 20 0 20 20 20 1.00 7.48 7 0 Undef 23668 P
AFFX-BioB-5_st 9 6 20 20 19 0.45 0.76 0 0 1.5 411 A
AFFX-BioB-M_st 7 6 20 20 19 0.35 0.45 1 0 1.2 51 A

Total number of rows: 6595

Table truncated, full table size 343 Kbytes.




Supplementary data files not provided
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