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Sample GSM3808 Query DataSets for GSM3808
Status Public on Jan 29, 2003
Title RH_TH3_negA
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4-CD8-
Replicate number: 3 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 5 3 19 19 19 0.26 0.39 0 0 1.7 -238 A
IL10_at 7 6 20 20 18 0.35 1.48 1 0 1.2 345 A
GMCSF_at 4 4 20 20 18 0.20 0.15 0 1 1.0 153 A
TNFRII_at 6 1 20 20 18 0.30 1.01 0 0 6.0 281 A
MIP1-B_at 5 3 20 20 19 0.25 0.13 0 0 1.7 154 A
IL4_at 3 4 20 20 18 0.15 1.22 0 0 0.8 43 A
IL12_P40_at 8 6 20 20 18 0.40 1.25 0 0 1.3 184 A
TNFa_at 6 3 20 20 18 0.30 0.85 0 0 2.0 23 A
TCRa_at 2 6 20 20 18 0.10 -1.15 0 0 0.3 -838 A
AFFX-BioB-5_at 4 6 20 20 19 0.20 0.33 0 0 0.7 189 A
AFFX-BioB-M_at 2 2 20 20 19 0.10 0.24 0 0 1.0 -19 A
AFFX-BioB-3_at 4 4 20 20 20 0.20 0.13 0 0 1.0 173 A
AFFX-BioC-5_at 13 1 20 20 19 0.65 2.53 0 0 13.0 1334 P
AFFX-BioC-3_at 11 1 20 20 20 0.55 1.89 0 0 11.0 1141 P
AFFX-BioDn-5_at 16 2 20 20 19 0.80 3.28 0 0 8.0 1627 P
AFFX-BioDn-3_at 14 0 20 20 20 0.70 3.97 0 0 Undef 8564 P
AFFX-CreX-5_at 19 0 20 20 20 0.95 7.07 4 0 Undef 14666 P
AFFX-CreX-3_at 19 0 20 20 20 0.95 6.15 2 0 Undef 18659 P
AFFX-BioB-5_st 6 6 20 20 19 0.30 0.32 0 0 1.0 199 A
AFFX-BioB-M_st 4 5 20 20 19 0.20 0.45 0 0 0.8 -25 A

Total number of rows: 6584

Table truncated, full table size 333 Kbytes.




Supplementary data files not provided
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