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Sample GSM3807 Query DataSets for GSM3807
Status Public on Jan 29, 2003
Title RH_TH3_8B
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4-CD8+
Replicate number: 3 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 5 2 19 19 18 0.26 0.54 0 0 2.5 24 A
IL10_at 7 4 20 20 18 0.35 0.53 0 0 1.8 160 A
GMCSF_at 6 5 20 20 18 0.30 0.57 0 1 1.2 -291 A
TNFRII_at 10 2 20 20 20 0.50 1.65 1 0 5.0 338 P
MIP1-B_at 5 4 20 20 19 0.25 1.15 0 0 1.3 1907 A
IL4_at 7 5 20 20 19 0.35 1.53 2 1 1.4 167 A
IL12_P40_at 8 5 20 20 18 0.40 1.71 1 0 1.6 45 A
TNFa_at 3 7 20 20 19 0.15 -0.14 1 0 0.4 -225 A
TCRa_at 3 9 20 20 19 0.15 -1.28 0 0 0.3 -1462 A
AFFX-BioB-5_at 8 6 20 20 18 0.40 0.54 0 1 1.3 341 A
AFFX-BioB-M_at 5 3 20 20 19 0.25 1.46 2 0 1.7 -84 A
AFFX-BioB-3_at 10 5 20 20 19 0.50 0.89 2 0 2.0 307 A
AFFX-BioC-5_at 13 2 20 20 20 0.65 4.01 3 0 6.5 1475 P
AFFX-BioC-3_at 9 2 20 20 19 0.45 1.92 0 0 4.5 880 P
AFFX-BioDn-5_at 10 2 20 20 18 0.50 2.69 1 0 5.0 621 P
AFFX-BioDn-3_at 15 0 20 20 19 0.75 3.73 0 0 Undef 6111 P
AFFX-CreX-5_at 19 0 20 20 20 0.95 7.17 4 0 Undef 11264 P
AFFX-CreX-3_at 18 0 20 20 20 0.90 7.08 8 0 Undef 16127 P
AFFX-BioB-5_st 10 5 20 20 18 0.50 1.76 0 0 2.0 1060 A
AFFX-BioB-M_st 7 3 20 20 17 0.35 1.63 2 0 2.3 265 A

Total number of rows: 6595

Table truncated, full table size 340 Kbytes.




Supplementary data files not provided
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