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Sample GSM3805 Query DataSets for GSM3805
Status Public on Jan 29, 2003
Title RH_TH3_4B
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4+CD8-
Replicate number: 3 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 3 3 19 19 18 0.16 0.60 0 0 1.0 162 A
IL10_at 9 2 20 20 18 0.45 1.82 1 0 4.5 379 P
GMCSF_at 6 4 20 20 18 0.30 0.35 1 1 1.5 -83 A
TNFRII_at 10 2 20 20 20 0.50 1.85 0 0 5.0 476 P
MIP1-B_at 8 2 20 20 18 0.40 1.33 0 0 4.0 1470 P
IL4_at 8 3 20 20 19 0.40 1.68 1 0 2.7 276 A
IL12_P40_at 5 5 20 20 18 0.25 0.75 0 0 1.0 -118 A
TNFa_at 6 4 20 20 19 0.30 0.67 0 0 1.5 -29 A
TCRa_at 7 2 20 20 19 0.35 1.20 0 0 3.5 1989 M
AFFX-BioB-5_at 5 6 20 20 18 0.25 0.73 1 0 0.8 317 A
AFFX-BioB-M_at 4 4 20 20 18 0.20 -0.01 0 1 1.0 -308 A
AFFX-BioB-3_at 7 4 20 20 19 0.35 -0.27 1 1 1.8 191 A
AFFX-BioC-5_at 12 3 20 20 18 0.60 3.87 2 0 4.0 1376 P
AFFX-BioC-3_at 8 4 20 20 18 0.40 1.71 2 1 2.0 805 A
AFFX-BioDn-5_at 10 5 20 20 19 0.50 1.01 1 0 2.0 208 A
AFFX-BioDn-3_at 15 0 20 20 20 0.75 4.38 0 0 Undef 7971 P
AFFX-CreX-5_at 18 0 20 20 20 0.90 7.41 8 0 Undef 12065 P
AFFX-CreX-3_at 19 0 20 20 20 0.95 7.90 7 0 Undef 17044 P
AFFX-BioB-5_st 9 7 20 20 18 0.45 1.05 1 1 1.3 913 A
AFFX-BioB-M_st 6 3 20 20 17 0.30 0.77 2 0 2.0 23 A

Total number of rows: 6595

Table truncated, full table size 341 Kbytes.




Supplementary data files not provided
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