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Sample GSM3804 Query DataSets for GSM3804
Status Public on Jan 29, 2003
Title RH_TH3_4A
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4+CD8-
Replicate number: 3 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 1 2 19 19 17 0.05 0.03 0 0 0.5 -7 A
IL10_at 5 2 20 20 19 0.25 0.16 0 0 2.5 36 A
GMCSF_at 6 4 20 20 18 0.30 0.20 0 0 1.5 -89 A
TNFRII_at 6 3 20 20 20 0.30 0.82 0 0 2.0 255 A
MIP1-B_at 7 4 20 20 18 0.35 1.00 0 0 1.8 763 A
IL4_at 3 2 20 20 19 0.15 0.55 0 0 1.5 102 A
IL12_P40_at 6 4 20 20 18 0.30 1.05 0 0 1.5 86 A
TNFa_at 5 2 20 20 18 0.25 1.01 0 0 2.5 41 A
TCRa_at 5 2 20 20 18 0.25 0.19 0 0 2.5 -105 A
AFFX-BioB-5_at 3 7 20 20 17 0.15 -0.72 0 0 0.4 -1 A
AFFX-BioB-M_at 2 4 20 20 18 0.10 -0.68 0 0 0.5 -200 A
AFFX-BioB-3_at 6 4 20 20 19 0.30 -0.27 0 0 1.5 7 A
AFFX-BioC-5_at 8 3 20 20 20 0.40 1.81 0 0 2.7 537 A
AFFX-BioC-3_at 5 2 20 20 19 0.25 0.52 0 1 2.5 130 A
AFFX-BioDn-5_at 8 4 20 20 20 0.40 0.78 0 1 2.0 212 A
AFFX-BioDn-3_at 10 1 20 20 18 0.50 1.68 0 0 10.0 1419 P
AFFX-CreX-5_at 19 0 20 20 20 0.95 6.25 2 0 Undef 4035 P
AFFX-CreX-3_at 18 0 20 20 20 0.90 6.55 3 0 Undef 8076 P
AFFX-BioB-5_st 5 5 20 20 18 0.25 0.36 0 0 1.0 337 A
AFFX-BioB-M_st 3 6 20 20 17 0.15 -0.40 0 0 0.5 -223 A

Total number of rows: 6584

Table truncated, full table size 327 Kbytes.




Supplementary data files not provided

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