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Sample GSM3803 Query DataSets for GSM3803
Status Public on Jan 29, 2003
Title RH_TH3_48LB
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+large
Replicate number: 3 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 4 4 19 19 19 0.21 0.47 0 0 1.0 -407 A
IL10_at 8 6 20 20 19 0.40 1.31 0 0 1.3 380 A
GMCSF_at 7 5 20 20 18 0.35 1.02 0 1 1.4 587 A
TNFRII_at 12 2 20 20 18 0.60 1.74 0 0 6.0 562 P
MIP1-B_at 8 4 20 20 18 0.40 0.95 0 0 2.0 976 A
IL4_at 7 3 20 20 18 0.35 1.71 2 0 2.3 149 A
IL12_P40_at 7 7 20 20 17 0.35 0.83 1 0 1.0 -94 A
TNFa_at 10 5 20 20 20 0.50 1.10 0 1 2.0 -60 A
TCRa_at 10 1 20 20 20 0.50 1.68 0 0 10.0 3705 P
AFFX-BioB-5_at 9 5 20 20 18 0.45 2.01 2 0 1.8 531 A
AFFX-BioB-M_at 7 2 20 20 19 0.35 1.59 0 0 3.5 138 P
AFFX-BioB-3_at 6 4 20 20 20 0.30 0.01 0 0 1.5 243 A
AFFX-BioC-5_at 15 3 20 20 20 0.75 3.44 0 0 5.0 2708 P
AFFX-BioC-3_at 11 2 20 20 19 0.55 1.90 0 0 5.5 1469 P
AFFX-BioDn-5_at 14 1 20 20 19 0.70 3.29 0 0 14.0 2376 P
AFFX-BioDn-3_at 15 0 20 20 20 0.75 4.40 2 0 Undef 13221 P
AFFX-CreX-5_at 19 0 20 20 20 0.95 6.85 3 0 Undef 22571 P
AFFX-CreX-3_at 16 0 20 20 20 0.80 5.97 5 0 Undef 21582 P
AFFX-BioB-5_st 9 7 20 20 20 0.45 1.02 0 0 1.3 1302 A
AFFX-BioB-M_st 7 7 20 20 19 0.35 1.04 1 0 1.0 109 A

Total number of rows: 6595

Table truncated, full table size 343 Kbytes.




Supplementary data files not provided
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