NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM3802 Query DataSets for GSM3802
Status Public on Jan 29, 2003
Title RH_TH3_48LA
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+large
Replicate number: 3 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 5 3 19 19 19 0.26 0.50 0 0 1.7 -173 A
IL10_at 10 5 20 20 19 0.50 0.94 0 0 2.0 276 A
GMCSF_at 6 4 20 20 18 0.30 0.87 0 0 1.5 303 A
TNFRII_at 9 2 20 20 18 0.45 1.17 0 0 4.5 402 P
MIP1-B_at 6 2 20 20 18 0.30 0.84 0 0 3.0 800 A
IL4_at 7 4 20 20 18 0.35 1.02 1 0 1.8 112 A
IL12_P40_at 7 5 20 20 18 0.35 1.49 0 0 1.4 252 A
TNFa_at 7 6 20 20 20 0.35 0.57 2 0 1.2 -42 A
TCRa_at 9 1 20 20 19 0.45 1.39 0 0 9.0 2003 P
AFFX-BioB-5_at 6 6 20 20 18 0.30 0.77 0 0 1.0 304 A
AFFX-BioB-M_at 4 3 20 20 19 0.20 0.82 0 0 1.3 26 A
AFFX-BioB-3_at 7 4 20 20 20 0.35 0.29 0 0 1.8 208 A
AFFX-BioC-5_at 13 1 20 20 20 0.65 3.16 0 0 13.0 1841 P
AFFX-BioC-3_at 11 1 20 20 20 0.55 1.93 0 0 11.0 1057 P
AFFX-BioDn-5_at 15 2 20 20 19 0.75 3.76 1 0 7.5 1794 P
AFFX-BioDn-3_at 15 0 20 20 20 0.75 4.37 1 0 Undef 10251 P
AFFX-CreX-5_at 20 0 20 20 20 1.00 7.51 5 0 Undef 17982 P
AFFX-CreX-3_at 19 0 20 20 20 0.95 6.87 5 0 Undef 21750 P
AFFX-BioB-5_st 9 6 20 20 20 0.45 1.03 0 0 1.5 712 A
AFFX-BioB-M_st 5 7 20 20 18 0.25 0.44 0 0 0.7 -160 A

Total number of rows: 6584

Table truncated, full table size 334 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap