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Sample GSM3801 Query DataSets for GSM3801
Status Public on Jan 29, 2003
Title RH_TH3_44B
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25-CD4-CD8-
Replicate number: 3 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 9 2 19 19 18 0.47 1.82 0 0 4.5 177 P
IL10_at 8 6 20 20 19 0.40 1.54 0 0 1.3 295 A
GMCSF_at 6 4 20 20 18 0.30 1.24 0 0 1.5 985 A
TNFRII_at 7 1 20 20 18 0.35 1.08 0 0 7.0 464 P
MIP1-B_at 9 2 20 20 20 0.45 2.23 0 0 4.5 6199 P
IL4_at 13 3 20 20 18 0.65 4.01 4 0 4.3 857 P
IL12_P40_at 6 6 20 20 18 0.30 1.10 0 0 1.0 54 A
TNFa_at 10 5 20 20 19 0.50 0.44 1 0 2.0 -202 A
TCRa_at 11 0 20 20 20 0.55 3.09 0 0 Undef 9651 P
AFFX-BioB-5_at 6 5 20 20 19 0.30 0.37 0 0 1.2 -10 A
AFFX-BioB-M_at 7 2 20 20 19 0.35 1.05 0 0 3.5 35 M
AFFX-BioB-3_at 7 5 20 20 19 0.35 -0.05 0 0 1.4 169 A
AFFX-BioC-5_at 16 3 20 20 19 0.80 3.65 1 0 5.3 2194 P
AFFX-BioC-3_at 14 2 20 20 19 0.70 1.88 0 0 7.0 1457 P
AFFX-BioDn-5_at 14 2 20 20 20 0.70 3.56 0 0 7.0 2315 P
AFFX-BioDn-3_at 15 0 20 20 20 0.75 4.47 3 0 Undef 12852 P
AFFX-CreX-5_at 18 0 20 20 20 0.90 7.22 7 0 Undef 21032 P
AFFX-CreX-3_at 17 0 20 20 20 0.85 6.65 7 0 Undef 21918 P
AFFX-BioB-5_st 8 6 20 20 20 0.40 1.00 0 0 1.3 1122 A
AFFX-BioB-M_st 7 6 20 20 17 0.35 0.69 0 0 1.2 -126 A

Total number of rows: 6595

Table truncated, full table size 344 Kbytes.




Supplementary data files not provided
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