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Sample GSM3799 Query DataSets for GSM3799
Status Public on Jan 29, 2003
Title RH_TH3_25B
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25+CD4-CD8-
Replicate number: 3 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 6 4 19 19 17 0.32 1.01 0 0 1.5 -45 A
IL10_at 8 7 20 20 19 0.40 1.10 0 0 1.1 310 A
GMCSF_at 6 5 20 20 18 0.30 0.60 0 1 1.2 491 A
TNFRII_at 7 1 20 20 18 0.35 1.11 0 0 7.0 348 P
MIP1-B_at 7 2 20 20 19 0.35 1.12 0 0 3.5 916 M
IL4_at 5 4 20 20 18 0.25 0.84 2 0 1.3 87 A
IL12_P40_at 7 7 20 20 18 0.35 0.55 1 0 1.0 -628 A
TNFa_at 9 6 20 20 19 0.45 0.59 0 1 1.5 -123 A
TCRa_at 2 10 20 20 19 0.10 -2.47 0 0 0.2 -1925 A
AFFX-BioB-5_at 5 4 20 20 18 0.25 0.89 0 0 1.3 555 A
AFFX-BioB-M_at 7 2 20 20 18 0.35 1.27 0 0 3.5 226 M
AFFX-BioB-3_at 9 3 20 20 20 0.45 0.91 0 0 3.0 671 M
AFFX-BioC-5_at 9 5 20 20 20 0.45 1.45 4 2 1.8 802 A
AFFX-BioC-3_at 14 1 20 20 19 0.70 2.68 0 0 14.0 2008 P
AFFX-BioDn-5_at 16 1 20 20 19 0.80 4.16 1 0 16.0 2806 P
AFFX-BioDn-3_at 15 0 20 20 20 0.75 4.85 2 0 Undef 15762 P
AFFX-CreX-5_at 19 0 20 20 20 0.95 7.59 7 0 Undef 22973 P
AFFX-CreX-3_at 16 0 20 20 20 0.80 6.43 6 0 Undef 23438 P
AFFX-BioB-5_st 9 5 20 20 19 0.45 1.10 0 0 1.8 860 A
AFFX-BioB-M_st 9 6 20 20 18 0.45 0.42 1 0 1.5 -342 A

Total number of rows: 6595

Table truncated, full table size 343 Kbytes.




Supplementary data files not provided
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