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Sample GSM3798 Query DataSets for GSM3798
Status Public on Jan 29, 2003
Title RH_TH3_25A
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25+CD4-CD8-
Replicate number: 3 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 4 4 19 19 17 0.21 0.42 0 0 1.0 -157 A
IL10_at 7 6 20 20 18 0.35 2.16 2 0 1.2 398 A
GMCSF_at 7 7 20 20 18 0.35 0.43 0 1 1.0 3 A
TNFRII_at 6 3 20 20 18 0.30 0.75 0 0 2.0 230 A
MIP1-B_at 6 3 20 20 18 0.30 0.43 0 0 2.0 -79 A
IL4_at 6 4 20 20 18 0.30 0.39 0 0 1.5 48 A
IL12_P40_at 7 6 20 20 18 0.35 1.10 2 0 1.2 -574 A
TNFa_at 6 7 20 20 19 0.30 -0.89 0 2 0.9 -132 A
TCRa_at 2 9 20 20 19 0.10 -1.88 0 0 0.2 -1137 A
AFFX-BioB-5_at 9 6 20 20 19 0.45 0.69 0 0 1.5 159 A
AFFX-BioB-M_at 3 2 20 20 18 0.15 0.58 0 0 1.5 19 A
AFFX-BioB-3_at 10 4 20 20 19 0.50 1.33 0 0 2.5 434 A
AFFX-BioC-5_at 14 0 20 20 19 0.70 3.47 0 0 Undef 1449 P
AFFX-BioC-3_at 11 2 20 20 19 0.55 1.87 0 0 5.5 893 P
AFFX-BioDn-5_at 15 1 20 20 19 0.75 3.54 0 0 15.0 1568 P
AFFX-BioDn-3_at 15 0 20 20 20 0.75 4.42 0 0 Undef 11407 P
AFFX-CreX-5_at 20 0 20 20 20 1.00 7.64 6 0 Undef 18516 P
AFFX-CreX-3_at 18 0 20 20 20 0.90 6.71 6 0 Undef 21688 P
AFFX-BioB-5_st 9 4 20 20 19 0.45 1.56 0 0 2.3 475 A
AFFX-BioB-M_st 6 7 20 20 18 0.30 0.57 0 0 0.9 -178 A

Total number of rows: 6584

Table truncated, full table size 334 Kbytes.




Supplementary data files not provided
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