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Sample GSM379683 Query DataSets for GSM379683
Status Public on Feb 28, 2010
Title Mutant Histone H2B K111A replicate 3
Sample type RNA
 
Source name Mutant yeast strain Histone H2B K111A
Organism Saccharomyces cerevisiae
Characteristics genotype: WY317 (mutant Histone H2B K111A)
Extracted molecule total RNA
Extraction protocol Cells were grown in YPD media until mid-log phase. Cells were harvested at OD600 of 0.35-0.7. Cells were lysed and RNA was extracted by hot acid phenol chloroform and phenol chloroform isoamyl alcohol extraction.
Label biotin
Label protocol Approximately 20 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Mutant yeast strain Histone H2B K111A
Data processing Affymetrix GeneChip Operating Software v.1.4
 
Submission date Mar 12, 2009
Last update date Mar 12, 2009
Contact name John J. Wyrick
E-mail(s) [email protected]
Phone 509-335-8785
Organization name Washington State University
Department School of Molecular Biosciences
Street address Biotechnology Life Sciences 241
City Pullman
State/province WA
ZIP/Postal code 99164
Country USA
 
Platform ID GPL2529
Series (1)
GSE15203 Histone H2B K111A

Data table header descriptions
ID_REF
VALUE Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P) absent (A) marginal (M) or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 33.3 P
AFFX-BioB-M_at 45.2 P
AFFX-BioB-3_at 34.8 P
AFFX-BioC-5_at 69.7 P
AFFX-BioC-3_at 107.1 P
AFFX-BioDn-5_at 188.5 P
AFFX-BioDn-3_at 368.2 P
AFFX-CreX-5_at 995.8 P
AFFX-CreX-3_at 1069.3 P
AFFX-DapX-5_at 539.4 P
AFFX-DapX-M_at 853 P
AFFX-DapX-3_at 947.5 P
AFFX-LysX-5_at 1520.9 P
AFFX-LysX-M_at 1221.1 P
AFFX-LysX-3_at 1442.6 P
AFFX-PheX-5_at 1132 P
AFFX-PheX-M_at 1317.8 P
AFFX-PheX-3_at 1181.6 P
AFFX-ThrX-5_at 260.5 P
AFFX-ThrX-M_at 364.9 P

Total number of rows: 10928

Table truncated, full table size 191 Kbytes.




Supplementary file Size Download File type/resource
GSM379683.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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