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Sample GSM379682 Query DataSets for GSM379682
Status Public on Feb 28, 2010
Title Mutant Histone H2B K111A replicate 2
Sample type RNA
 
Source name Mutant yeast strain Histone H2B K111A
Organism Saccharomyces cerevisiae
Characteristics genotype: WY317 (mutant Histone H2B K111A)
Extracted molecule total RNA
Extraction protocol Cells were grown in YPD media until mid-log phase. Cells were harvested at OD600 of 0.35-0.7. Cells were lysed and RNA was extracted by hot acid phenol chloroform and phenol chloroform isoamyl alcohol extraction.
Label biotin
Label protocol Approximately 20 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Mutant yeast strain Histone H2B K111A
Data processing Affymetrix GeneChip Operating Software v.1.4
 
Submission date Mar 12, 2009
Last update date Mar 12, 2009
Contact name John J. Wyrick
E-mail(s) [email protected]
Phone 509-335-8785
Organization name Washington State University
Department School of Molecular Biosciences
Street address Biotechnology Life Sciences 241
City Pullman
State/province WA
ZIP/Postal code 99164
Country USA
 
Platform ID GPL2529
Series (1)
GSE15203 Histone H2B K111A

Data table header descriptions
ID_REF
VALUE Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P) absent (A) marginal (M) or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 31.5 P
AFFX-BioB-M_at 41.5 P
AFFX-BioB-3_at 31 P
AFFX-BioC-5_at 63.3 P
AFFX-BioC-3_at 99.5 P
AFFX-BioDn-5_at 174.7 P
AFFX-BioDn-3_at 368.4 P
AFFX-CreX-5_at 987.7 P
AFFX-CreX-3_at 1083.9 P
AFFX-DapX-5_at 561.3 P
AFFX-DapX-M_at 907.6 P
AFFX-DapX-3_at 976.6 P
AFFX-LysX-5_at 1532.9 P
AFFX-LysX-M_at 1238.6 P
AFFX-LysX-3_at 1548.8 P
AFFX-PheX-5_at 1128.5 P
AFFX-PheX-M_at 1336.1 P
AFFX-PheX-3_at 1227.3 P
AFFX-ThrX-5_at 244.9 P
AFFX-ThrX-M_at 359.7 P

Total number of rows: 10928

Table truncated, full table size 191 Kbytes.




Supplementary file Size Download File type/resource
GSM379682.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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