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Sample GSM379681 Query DataSets for GSM379681
Status Public on Feb 28, 2010
Title Mutant Histone H2B K111A replicate 1
Sample type RNA
 
Source name Mutant yeast strain Histone H2B K111A
Organism Saccharomyces cerevisiae
Characteristics genotype: WY317 (mutant Histone H2B K111A)
Extracted molecule total RNA
Extraction protocol Cells were grown in YPD media until mid-log phase. Cells were harvested at OD600 of 0.35-0.7. Cells were lysed and RNA was extracted by hot acid phenol chloroform and phenol chloroform isoamyl alcohol extraction.
Label biotin
Label protocol Approximately 20 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Mutant yeast strain Histone H2B K111A
Data processing Affymetrix GeneChip Operating Software v.1.4
 
Submission date Mar 12, 2009
Last update date Mar 12, 2009
Contact name John J. Wyrick
E-mail(s) [email protected]
Phone 509-335-8785
Organization name Washington State University
Department School of Molecular Biosciences
Street address Biotechnology Life Sciences 241
City Pullman
State/province WA
ZIP/Postal code 99164
Country USA
 
Platform ID GPL2529
Series (1)
GSE15203 Histone H2B K111A

Data table header descriptions
ID_REF
VALUE Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P) absent (A) marginal (M) or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 32.1 P
AFFX-BioB-M_at 41.3 P
AFFX-BioB-3_at 27.2 P
AFFX-BioC-5_at 65.3 P
AFFX-BioC-3_at 95 P
AFFX-BioDn-5_at 173.4 P
AFFX-BioDn-3_at 353.9 P
AFFX-CreX-5_at 989.9 P
AFFX-CreX-3_at 1068.5 P
AFFX-DapX-5_at 498.3 P
AFFX-DapX-M_at 853.2 P
AFFX-DapX-3_at 1009.5 P
AFFX-LysX-5_at 1529 P
AFFX-LysX-M_at 1258.5 P
AFFX-LysX-3_at 1590.3 P
AFFX-PheX-5_at 1138.4 P
AFFX-PheX-M_at 1367.4 P
AFFX-PheX-3_at 1252.7 P
AFFX-ThrX-5_at 242.7 P
AFFX-ThrX-M_at 352.5 P

Total number of rows: 10928

Table truncated, full table size 191 Kbytes.




Supplementary file Size Download File type/resource
GSM379681.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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