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Sample GSM379676 Query DataSets for GSM379676
Status Public on Feb 28, 2010
Title Wild-type for H2B R102A and H2B K111A replicate 2
Sample type RNA
 
Source name Wild-type yeast strain
Organism Saccharomyces cerevisiae
Characteristics genotype: PY014 (wild-type Histone H2B)
Extracted molecule total RNA
Extraction protocol Cells were grown in YPD media until mid-log phase. Cells were harvested at OD600 of 0.35-0.7. Cells were lysed and RNA was extracted by hot acid phenol chloroform and phenol chloroform isoamyl alcohol extraction.
Label biotin
Label protocol Approximately 20 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild-type yeast strain
Data processing Affymetrix GeneChip Operating Software v.1.4
 
Submission date Mar 12, 2009
Last update date Mar 12, 2009
Contact name John J. Wyrick
E-mail(s) [email protected]
Phone 509-335-8785
Organization name Washington State University
Department School of Molecular Biosciences
Street address Biotechnology Life Sciences 241
City Pullman
State/province WA
ZIP/Postal code 99164
Country USA
 
Platform ID GPL2529
Series (2)
GSE15202 Histone H2B R102A
GSE15203 Histone H2B K111A

Data table header descriptions
ID_REF
VALUE Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P) absent (A) marginal (M) or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 33.2 P
AFFX-BioB-M_at 45.4 P
AFFX-BioB-3_at 29.3 P
AFFX-BioC-5_at 68.3 P
AFFX-BioC-3_at 102 P
AFFX-BioDn-5_at 168.8 P
AFFX-BioDn-3_at 406.4 P
AFFX-CreX-5_at 998.1 P
AFFX-CreX-3_at 1150.8 P
AFFX-DapX-5_at 406.4 P
AFFX-DapX-M_at 826.7 P
AFFX-DapX-3_at 940 P
AFFX-LysX-5_at 1369.1 P
AFFX-LysX-M_at 1341.7 P
AFFX-LysX-3_at 1554.7 P
AFFX-PheX-5_at 1097.4 P
AFFX-PheX-M_at 1403.8 P
AFFX-PheX-3_at 1260.7 P
AFFX-ThrX-5_at 203.8 P
AFFX-ThrX-M_at 334.8 P

Total number of rows: 10928

Table truncated, full table size 191 Kbytes.




Supplementary file Size Download File type/resource
GSM379676.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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