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Sample GSM3795 Query DataSets for GSM3795
Status Public on Jan 29, 2003
Title RH_TH2_negB
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4-CD8-
Replicate number: 2 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 3 4 19 19 18 0.16 -0.19 0 0 0.8 -159 A
IL10_at 10 2 20 20 18 0.50 1.32 0 0 5.0 851 P
GMCSF_at 5 3 20 20 18 0.25 -0.10 0 0 1.7 -1214 A
TNFRII_at 8 1 20 20 19 0.40 1.24 0 0 8.0 432 P
MIP1-B_at 8 6 20 20 18 0.40 0.41 0 0 1.3 850 A
IL4_at 8 3 20 20 17 0.40 1.86 1 0 2.7 518 A
IL12_P40_at 7 4 20 20 18 0.35 1.98 0 0 1.8 950 A
TNFa_at 8 1 20 20 17 0.40 1.11 0 0 8.0 456 P
TCRa_at 2 6 20 20 19 0.10 -0.90 0 0 0.3 -1700 A
AFFX-BioB-5_at 6 6 20 20 17 0.30 0.32 1 0 1.0 109 A
AFFX-BioB-M_at 1 5 20 20 18 0.05 -0.26 0 0 0.2 -286 A
AFFX-BioB-3_at 8 5 20 20 19 0.40 0.48 1 0 1.6 544 A
AFFX-BioC-5_at 10 2 20 20 19 0.50 2.52 0 0 5.0 1114 P
AFFX-BioC-3_at 10 2 20 20 19 0.50 1.52 0 0 5.0 812 P
AFFX-BioDn-5_at 10 3 20 20 20 0.50 2.19 0 0 3.3 785 P
AFFX-BioDn-3_at 13 0 20 20 20 0.65 2.91 0 0 Undef 6411 P
AFFX-CreX-5_at 18 0 20 20 20 0.90 6.43 0 0 Undef 11558 P
AFFX-CreX-3_at 18 0 20 20 20 0.90 6.28 4 0 Undef 16849 P
AFFX-BioB-5_st 6 5 20 20 19 0.30 0.43 0 0 1.2 2094 A
AFFX-BioB-M_st 5 5 20 20 17 0.25 0.97 1 0 1.0 152 A

Total number of rows: 6595

Table truncated, full table size 341 Kbytes.




Supplementary data files not provided
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