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Sample GSM3794 Query DataSets for GSM3794
Status Public on Jan 29, 2003
Title RH_TH2_negA
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4-CD8-
Replicate number: 2 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 3 3 19 19 18 0.16 0.03 0 0 1.0 26 A
IL10_at 5 1 20 20 18 0.25 0.23 0 0 5.0 236 A
GMCSF_at 4 3 20 20 18 0.20 0.33 0 0 1.3 -104 A
TNFRII_at 4 3 20 20 19 0.20 0.62 0 0 1.3 452 A
MIP1-B_at 4 3 20 20 18 0.20 0.01 0 0 1.3 665 A
IL4_at 3 2 20 20 19 0.15 0.61 0 0 1.5 172 A
IL12_P40_at 4 6 20 20 18 0.20 0.54 0 0 0.7 30 A
TNFa_at 5 3 20 20 19 0.25 0.75 0 0 1.7 -164 A
TCRa_at 2 3 20 20 18 0.10 -0.69 0 0 0.7 -828 A
AFFX-BioB-5_at 3 4 20 20 17 0.15 -0.27 0 0 0.8 -77 A
AFFX-BioB-M_at 0 3 20 20 19 0.00 -0.29 0 0 0.0 -563 A
AFFX-BioB-3_at 4 4 20 20 18 0.20 -0.40 0 0 1.0 -21 A
AFFX-BioC-5_at 7 3 20 20 19 0.35 1.20 0 0 2.3 1132 A
AFFX-BioC-3_at 2 5 20 20 19 0.10 -0.44 0 0 0.4 -562 A
AFFX-BioDn-5_at 4 6 20 20 20 0.20 -0.47 0 0 0.7 -531 A
AFFX-BioDn-3_at 6 1 20 20 19 0.30 0.93 0 0 6.0 1766 A
AFFX-CreX-5_at 16 0 20 20 19 0.80 3.20 0 0 Undef 4255 P
AFFX-CreX-3_at 17 1 20 20 19 0.85 4.26 1 0 17.0 9312 P
AFFX-BioB-5_st 5 4 20 20 18 0.25 0.48 0 0 1.3 1082 A
AFFX-BioB-M_st 4 4 20 20 17 0.20 0.21 0 0 1.0 -171 A

Total number of rows: 6584

Table truncated, full table size 328 Kbytes.




Supplementary data files not provided
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