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Sample GSM3793 Query DataSets for GSM3793
Status Public on Jan 29, 2003
Title RH_TH2_4B
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4+CD8-
Replicate number: 2 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 9 2 19 19 18 0.47 1.93 3 0 4.5 -39 P
IL10_at 8 4 20 20 18 0.40 1.26 0 0 2.0 622 A
GMCSF_at 6 4 20 20 19 0.30 0.22 1 0 1.5 241 A
TNFRII_at 9 2 20 20 20 0.45 1.44 0 0 4.5 797 P
MIP1-B_at 7 2 20 20 17 0.35 1.14 0 0 3.5 438 M
IL4_at 8 4 20 20 19 0.40 1.45 0 0 2.0 456 A
IL12_P40_at 5 4 20 20 18 0.25 1.11 0 0 1.3 269 A
TNFa_at 5 3 20 20 19 0.25 0.33 0 0 1.7 -201 A
TCRa_at 7 3 20 20 19 0.35 1.25 0 0 2.3 3205 A
AFFX-BioB-5_at 4 7 20 20 17 0.20 -0.64 0 0 0.6 44 A
AFFX-BioB-M_at 6 4 20 20 19 0.30 0.85 1 0 1.5 -249 A
AFFX-BioB-3_at 9 5 20 20 20 0.45 0.79 1 0 1.8 663 A
AFFX-BioC-5_at 12 4 20 20 19 0.60 3.19 2 0 3.0 2243 P
AFFX-BioC-3_at 7 3 20 20 19 0.35 1.68 1 0 2.3 695 A
AFFX-BioDn-5_at 9 5 20 20 18 0.45 2.27 2 0 1.8 775 A
AFFX-BioDn-3_at 13 0 20 20 20 0.65 3.31 0 0 Undef 6452 P
AFFX-CreX-5_at 17 0 20 20 20 0.85 6.32 4 0 Undef 11506 P
AFFX-CreX-3_at 17 0 20 20 20 0.85 6.90 7 0 Undef 16390 P
AFFX-BioB-5_st 10 5 20 20 18 0.50 0.80 0 0 2.0 1803 A
AFFX-BioB-M_st 8 5 20 20 17 0.40 1.60 1 0 1.6 417 A

Total number of rows: 6595

Table truncated, full table size 342 Kbytes.




Supplementary data files not provided
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