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Sample GSM3791 Query DataSets for GSM3791
Status Public on Jan 29, 2003
Title RH_TH2_48sB
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+small
Replicate number: 2 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 7 2 19 19 19 0.37 0.80 0 0 3.5 187 A
IL10_at 7 5 20 20 18 0.35 0.45 0 0 1.4 209 A
GMCSF_at 6 4 20 20 18 0.30 0.28 0 0 1.5 -61 A
TNFRII_at 10 1 20 20 20 0.50 1.77 0 0 10.0 486 P
MIP1-B_at 6 2 20 20 19 0.30 0.59 0 0 3.0 1357 A
IL4_at 6 4 20 20 19 0.30 1.20 0 0 1.5 171 A
IL12_P40_at 5 5 20 20 19 0.25 0.64 0 0 1.0 -48 A
TNFa_at 3 3 20 20 20 0.15 -0.05 0 0 1.0 -273 A
TCRa_at 7 4 20 20 19 0.35 0.43 0 0 1.8 300 A
AFFX-BioB-5_at 5 6 20 20 17 0.25 -0.28 0 0 0.8 139 A
AFFX-BioB-M_at 2 3 20 20 18 0.10 0.23 0 0 0.7 -15 A
AFFX-BioB-3_at 6 4 20 20 19 0.30 -0.08 0 0 1.5 77 A
AFFX-BioC-5_at 10 3 20 20 20 0.50 2.64 0 0 3.3 1416 P
AFFX-BioC-3_at 6 2 20 20 19 0.30 1.23 0 0 3.0 892 A
AFFX-BioDn-5_at 12 1 20 20 19 0.60 2.12 0 0 12.0 717 P
AFFX-BioDn-3_at 15 0 20 20 19 0.75 3.63 0 0 Undef 5870 P
AFFX-CreX-5_at 20 0 20 20 20 1.00 7.01 1 0 Undef 12388 P
AFFX-CreX-3_at 19 0 20 20 20 0.95 7.19 6 0 Undef 17231 P
AFFX-BioB-5_st 8 6 20 20 18 0.40 0.57 0 0 1.3 779 A
AFFX-BioB-M_st 6 2 20 20 17 0.30 1.07 1 0 3.0 158 A

Total number of rows: 6595

Table truncated, full table size 340 Kbytes.




Supplementary data files not provided
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