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Sample GSM3790 Query DataSets for GSM3790
Status Public on Jan 29, 2003
Title RH_TH2_48sA
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25-CD4+CD8+small
Replicate number: 2 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 3 3 19 19 18 0.16 0.31 0 0 1.0 98 A
IL10_at 5 6 20 20 20 0.25 -0.13 0 0 0.8 -13 A
GMCSF_at 3 4 20 20 18 0.15 -0.05 0 0 0.8 -220 A
TNFRII_at 5 4 20 20 19 0.25 0.52 0 0 1.3 254 A
MIP1-B_at 5 4 20 20 18 0.25 0.86 0 0 1.3 1010 A
IL4_at 3 2 20 20 18 0.15 0.43 0 1 1.5 162 A
IL12_P40_at 3 4 20 20 18 0.15 0.26 0 0 0.8 0 A
TNFa_at 2 3 20 20 18 0.10 0.11 0 0 0.7 -28 A
TCRa_at 7 2 20 20 19 0.35 0.56 0 0 3.5 256 A
AFFX-BioB-5_at 3 8 20 20 17 0.15 -0.76 0 0 0.4 -189 A
AFFX-BioB-M_at 1 3 20 20 19 0.05 0.07 0 0 0.3 -140 A
AFFX-BioB-3_at 4 3 20 20 19 0.20 -0.37 0 0 1.3 -34 A
AFFX-BioC-5_at 9 2 20 20 19 0.45 1.66 0 0 4.5 866 P
AFFX-BioC-3_at 5 4 20 20 19 0.25 0.74 0 0 1.3 292 A
AFFX-BioDn-5_at 11 4 20 20 19 0.55 1.38 0 0 2.8 413 A
AFFX-BioDn-3_at 13 2 20 20 18 0.65 1.86 0 0 6.5 1635 P
AFFX-CreX-5_at 18 0 20 20 18 0.90 5.68 0 0 Undef 4760 P
AFFX-CreX-3_at 17 0 20 20 20 0.85 5.84 1 0 Undef 11018 P
AFFX-BioB-5_st 6 5 20 20 18 0.30 0.01 0 0 1.2 -323 A
AFFX-BioB-M_st 5 5 20 20 17 0.25 0.13 0 0 1.0 -161 A

Total number of rows: 6584

Table truncated, full table size 328 Kbytes.




Supplementary data files not provided
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