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Sample GSM3789 Query DataSets for GSM3789
Status Public on Jan 29, 2003
Title RH_TH2_44B
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25-CD4-CD8-
Replicate number: 2 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 4 3 19 19 19 0.21 0.28 0 0 1.3 54 A
IL10_at 6 6 20 20 19 0.30 0.60 0 0 1.0 411 A
GMCSF_at 5 4 20 20 18 0.25 0.22 0 0 1.3 109 A
TNFRII_at 10 1 20 20 20 0.50 1.71 0 0 10.0 642 P
MIP1-B_at 10 3 20 20 18 0.50 1.70 1 0 3.3 2141 P
IL4_at 10 3 20 20 19 0.50 2.00 0 0 3.3 578 P
IL12_P40_at 7 4 20 20 18 0.35 1.43 0 0 1.8 258 A
TNFa_at 5 5 20 20 20 0.25 0.54 0 0 1.0 -81 A
TCRa_at 10 2 20 20 20 0.50 1.83 0 0 5.0 2711 P
AFFX-BioB-5_at 5 6 20 20 18 0.25 0.15 0 0 0.8 230 A
AFFX-BioB-M_at 9 4 20 20 19 0.45 1.11 0 0 2.3 -75 A
AFFX-BioB-3_at 8 5 20 20 19 0.40 0.55 0 1 1.6 288 A
AFFX-BioC-5_at 14 2 20 20 20 0.70 3.77 3 0 7.0 2052 P
AFFX-BioC-3_at 9 3 20 20 18 0.45 1.49 0 0 3.0 1028 P
AFFX-BioDn-5_at 13 3 20 20 19 0.65 2.63 2 0 4.3 643 P
AFFX-BioDn-3_at 15 0 20 20 20 0.75 4.40 1 0 Undef 8642 P
AFFX-CreX-5_at 18 0 20 20 20 0.90 7.40 6 0 Undef 15282 P
AFFX-CreX-3_at 18 0 20 20 20 0.90 7.33 7 0 Undef 19461 P
AFFX-BioB-5_st 8 6 20 20 18 0.40 0.49 0 0 1.3 1196 A
AFFX-BioB-M_st 7 4 20 20 17 0.35 1.54 1 0 1.8 98 A

Total number of rows: 6595

Table truncated, full table size 341 Kbytes.




Supplementary data files not provided
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