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Sample GSM3788 Query DataSets for GSM3788
Status Public on Jan 29, 2003
Title RH_TH2_44A
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25-CD4-CD8-
Replicate number: 2 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 4 3 19 19 18 0.21 0.15 0 0 1.3 -18 A
IL10_at 1 6 20 20 19 0.05 -0.36 0 0 0.2 -64 A
GMCSF_at 4 4 20 20 19 0.20 0.44 0 0 1.0 10 A
TNFRII_at 2 3 20 20 18 0.10 0.20 0 0 0.7 53 A
MIP1-B_at 6 1 20 20 19 0.30 1.43 0 0 6.0 2183 A
IL4_at 4 3 20 20 19 0.20 0.44 0 0 1.3 263 A
IL12_P40_at 5 6 20 20 19 0.25 0.57 0 0 0.8 -208 A
TNFa_at 2 4 20 20 20 0.10 0.09 0 0 0.5 -252 A
TCRa_at 7 1 20 20 20 0.35 1.10 0 0 7.0 1422 P
AFFX-BioB-5_at 2 5 20 20 18 0.10 -0.28 0 0 0.4 -2 A
AFFX-BioB-M_at 1 5 20 20 19 0.05 -0.45 0 0 0.2 -170 A
AFFX-BioB-3_at 3 4 20 20 18 0.15 -0.23 0 0 0.8 36 A
AFFX-BioC-5_at 6 2 20 20 20 0.30 0.97 0 0 3.0 358 A
AFFX-BioC-3_at 1 3 20 20 20 0.05 -0.46 0 0 0.3 -144 A
AFFX-BioDn-5_at 5 6 20 20 20 0.25 0.39 0 0 0.8 2 A
AFFX-BioDn-3_at 9 2 20 20 19 0.45 1.45 0 0 4.5 1731 P
AFFX-CreX-5_at 16 0 20 20 19 0.80 4.46 0 0 Undef 3582 P
AFFX-CreX-3_at 18 0 20 20 20 0.90 5.06 1 0 Undef 8443 P
AFFX-BioB-5_st 6 6 20 20 19 0.30 0.25 0 0 1.0 584 A
AFFX-BioB-M_st 3 6 20 20 17 0.15 0.16 0 0 0.5 -53 A

Total number of rows: 6584

Table truncated, full table size 328 Kbytes.




Supplementary data files not provided
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