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Sample GSM3787 Query DataSets for GSM3787
Status Public on Jan 29, 2003
Title RH_TH2_25B
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25+CD4-CD8-
Replicate number: 2 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 5 4 19 19 19 0.26 0.45 0 0 1.3 -122 A
IL10_at 6 4 20 20 18 0.30 0.99 0 0 1.5 228 A
GMCSF_at 5 5 20 20 18 0.25 0.01 0 0 1.0 98 A
TNFRII_at 9 2 20 20 20 0.45 1.28 0 0 4.5 438 P
MIP1-B_at 7 3 20 20 18 0.35 0.84 0 0 2.3 781 A
IL4_at 5 5 20 20 19 0.25 0.68 2 1 1.0 159 A
IL12_P40_at 9 3 20 20 19 0.45 1.95 1 0 3.0 350 P
TNFa_at 7 0 20 20 20 0.35 1.74 0 0 Undef 392 P
TCRa_at 3 4 20 20 18 0.15 -0.61 0 0 0.8 -761 A
AFFX-BioB-5_at 3 5 20 20 17 0.15 0.05 0 0 0.6 42 A
AFFX-BioB-M_at 4 4 20 20 18 0.20 0.21 0 0 1.0 -218 A
AFFX-BioB-3_at 9 5 20 20 19 0.45 0.45 0 0 1.8 273 A
AFFX-BioC-5_at 11 2 20 20 19 0.55 2.48 0 0 5.5 1595 P
AFFX-BioC-3_at 6 2 20 20 18 0.30 1.14 0 0 3.0 650 A
AFFX-BioDn-5_at 11 2 20 20 19 0.55 1.95 0 0 5.5 560 P
AFFX-BioDn-3_at 15 0 20 20 19 0.75 4.24 2 0 Undef 5586 P
AFFX-CreX-5_at 19 0 20 20 20 0.95 7.48 3 0 Undef 11984 P
AFFX-CreX-3_at 19 0 20 20 20 0.95 7.71 6 0 Undef 17724 P
AFFX-BioB-5_st 8 5 20 20 19 0.40 0.84 0 0 1.6 640 A
AFFX-BioB-M_st 5 5 20 20 17 0.25 1.11 0 0 1.0 196 A

Total number of rows: 6595

Table truncated, full table size 340 Kbytes.




Supplementary data files not provided
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