 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jan 29, 2003 |
| Title |
RH_Th5_25B2 |
| Sample type |
RNA |
| |
|
| Source name |
Thymic T cell precursors
|
| Organism |
Mus musculus |
| Extracted molecule |
total RNA |
| |
|
| Description |
Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25+CD4-CD8-
Replicate number: 5 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
Background Avg: 2653.25, Stdev: 676.61, Max: 3888.6, Min: 1456.2
Corner+ Avg:8961, Count:32
Corner- Avg:43057, Count:32
BF= SDT=213.5(4.00Q) SRT=1.50 ABS={{3.0,4.0},{0.33,0.43},{0.90,1.30}} RawQ=53.37 QMult=2.80 RL=10.0 HZ=4 VZ=4 BG=2 CT=213.5 PCT=80 DD={{3.0,4.0},{0.33,0.43},{0.20,0.30},{0.90,1.30}} AvgNCT=200 FCMin=1.00 FCMax=1.00 STP=3.0 NF=1.000000 SF=1.000000
|
| |
|
| Submission date |
Jan 28, 2003 |
| Last update date |
May 27, 2005 |
| Contact name |
Reinhard Hoffmann |
| E-mail(s) |
[email protected]
|
| Phone |
+49-89-4140-4155
|
| Organization name |
Institute for medical microbiology
|
| Street address |
Trogerstr. 30
|
| City |
Munich |
| ZIP/Postal code |
81675 |
| Country |
Germany |
| |
|
| Platform ID |
GPL76 |
| Series (1) |
| GSE272 |
T and B lymphocyte development profiles |
|
| Data table header descriptions |
| ID_REF |
|
| Positive |
Number of positive probe pairs |
| Negative |
Number of negative probe pairs |
| Pairs |
Number of probe set specific probe pairs on the array |
| Pairs_Used |
Pairs used |
| Pairs_In_Ave |
Trimmed probe pair set |
| Pos_Fraction |
Positive/Pairs_Used |
| Log_Avg |
Log average |
| Pos/Neg |
Positive/Negative |
| VALUE |
Average Difference Intensity |
| ABS_CALL |
Whether a probe set is present, marginal, or absent |
| Data table |
| ID_REF |
Positive |
Negative |
Pairs |
Pairs_Used |
Pairs_In_Ave |
Pos_Fraction |
Log_Avg |
Pos/Neg |
VALUE |
ABS_CALL |
| IL2_at |
3 |
3 |
19 |
19 |
19 |
0.16 |
0.64 |
1.0 |
122.0 |
A |
| IL10_at |
6 |
6 |
20 |
20 |
20 |
0.30 |
-0.24 |
1.0 |
42.5 |
A |
| GMCSF_at |
6 |
7 |
20 |
20 |
18 |
0.30 |
1.00 |
0.9 |
757.7 |
A |
| TNFRII_at |
4 |
3 |
20 |
20 |
19 |
0.20 |
0.20 |
1.3 |
167.4 |
A |
| MIP1-B_at |
5 |
2 |
20 |
20 |
18 |
0.25 |
0.77 |
2.5 |
747.1 |
A |
| IL4_at |
4 |
6 |
20 |
20 |
18 |
0.20 |
0.30 |
0.7 |
11.8 |
A |
| IL12_P40_at |
4 |
7 |
20 |
20 |
18 |
0.20 |
-0.48 |
0.6 |
-336.1 |
A |
| TNFa_at |
2 |
6 |
20 |
20 |
19 |
0.10 |
-1.27 |
0.3 |
-146.1 |
A |
| TCRa_at |
3 |
6 |
20 |
20 |
19 |
0.15 |
-0.79 |
0.5 |
-431.6 |
A |
| AFFX-BioB-5_at |
7 |
5 |
20 |
20 |
17 |
0.35 |
0.85 |
1.4 |
318.0 |
A |
| AFFX-BioB-M_at |
4 |
1 |
20 |
20 |
19 |
0.20 |
0.59 |
4.0 |
106.3 |
A |
| AFFX-BioB-3_at |
6 |
3 |
20 |
20 |
19 |
0.30 |
0.20 |
2.0 |
133.1 |
A |
| AFFX-BioC-5_at |
13 |
2 |
20 |
20 |
19 |
0.65 |
2.71 |
6.5 |
1875.8 |
P |
| AFFX-BioC-3_at |
10 |
1 |
20 |
20 |
19 |
0.50 |
1.42 |
10.0 |
855.5 |
P |
| AFFX-BioDn-5_at |
13 |
2 |
20 |
20 |
19 |
0.65 |
2.19 |
6.5 |
945.4 |
P |
| AFFX-BioDn-3_at |
14 |
0 |
20 |
20 |
19 |
0.70 |
3.71 |
Undef |
6394.7 |
P |
| AFFX-CreX-5_at |
20 |
0 |
20 |
20 |
20 |
1.00 |
7.13 |
Undef |
13613.5 |
P |
| AFFX-CreX-3_at |
19 |
0 |
20 |
20 |
20 |
0.95 |
6.77 |
Undef |
18791.1 |
P |
| AFFX-BioB-5_st |
7 |
3 |
20 |
20 |
19 |
0.35 |
1.34 |
2.3 |
1360.3 |
A |
| AFFX-BioB-M_st |
6 |
3 |
20 |
20 |
17 |
0.30 |
1.22 |
2.0 |
274.6 |
A |
Total number of rows: 6595
Table truncated, full table size 328 Kbytes.
| Supplementary data files not provided |
|
|
|
|
 |
