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Sample GSM3732 Query DataSets for GSM3732
Status Public on Jan 29, 2003
Title RH_TH2_2544B
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25+CD4-CD8-
Replicate number: 2 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 5 2 19 19 18 0.26 0.82 0 0 2.5 245 A
IL10_at 6 2 20 20 18 0.30 0.79 0 0 3.0 464 A
GMCSF_at 5 5 20 20 19 0.25 -0.22 0 0 1.0 -618 A
TNFRII_at 9 3 20 20 20 0.45 0.82 0 0 3.0 451 A
MIP1-B_at 8 3 20 20 18 0.40 1.02 0 0 2.7 756 A
IL4_at 9 3 20 20 19 0.45 1.11 1 0 3.0 331 M
IL12_P40_at 5 5 20 20 17 0.25 0.24 0 0 1.0 -164 A
TNFa_at 6 2 20 20 20 0.30 0.92 0 0 3.0 -172 A
TCRa_at 2 5 20 20 18 0.10 -1.24 0 1 0.4 -1198 A
AFFX-BioB-5_at 3 6 20 20 17 0.15 -0.08 0 0 0.5 66 A
AFFX-BioB-M_at 4 5 20 20 19 0.20 0.07 0 0 0.8 -266 A
AFFX-BioB-3_at 7 7 20 20 18 0.35 -0.07 1 1 1.0 55 A
AFFX-BioC-5_at 12 2 20 20 19 0.60 1.70 0 0 6.0 644 P
AFFX-BioC-3_at 8 3 20 20 19 0.40 1.27 0 0 2.7 457 A
AFFX-BioDn-5_at 7 1 20 20 20 0.35 1.00 0 0 7.0 404 P
AFFX-BioDn-3_at 13 0 20 20 20 0.65 2.82 0 0 Undef 5896 P
AFFX-CreX-5_at 19 0 20 20 20 0.95 6.96 7 0 Undef 9708 P
AFFX-CreX-3_at 18 0 20 20 20 0.90 7.23 5 0 Undef 16203 P
AFFX-BioB-5_st 6 5 20 20 18 0.30 0.43 0 0 1.2 1069 A
AFFX-BioB-M_st 6 4 20 20 17 0.30 1.12 1 0 1.5 -95 A

Total number of rows: 6595

Table truncated, full table size 341 Kbytes.




Supplementary data files not provided
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