NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM363937 Query DataSets for GSM363937
Status Public on Feb 04, 2009
Title 153-INV
Sample type RNA
 
Source name breast cancer biopsy
Organism Homo sapiens
Characteristics invasive epithelium, tumor grade:I
Treatment protocol laser capture microdissected
Growth protocol fresh frozen primary breast cancer biopsy
Extracted molecule total RNA
Extraction protocol Picopure RNA extraction kit (Arcturus BioScience, Inc.)
Label biotin
Label protocol Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
 
Hybridization protocol Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
Scan protocol GeneChips were scannned using GeneChip Scanner 3000.
Description breast cancer
Data processing Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
 
Submission date Jan 23, 2009
Last update date Feb 04, 2009
Contact name Xiao-Jun Ma
E-mail(s) [email protected]
Organization name bioTheranostics, Inc.
Street address 11025 Roselle St, Suite 200
City San Diego
State/province CA
ZIP/Postal code CA, 92121
Country USA
 
Platform ID GPL1352
Series (1)
GSE14548 Gene Expression Profiling of Tumor Microenvironment during Breast Cancer Progression

Data table header descriptions
ID_REF
VALUE RMA signals in log2 scale.

Data table
ID_REF VALUE
1053_3p_at 1.619126724
117_3p_at 2.731314262
1494_3p_f_at 2.92267132
1552275_3p_s_at 1.780458294
1552281_3p_at 4.346988866
1552296_3p_at 1.823425855
1552302_3p_at 2.668485062
1552311_3p_a_at 3.426787863
1552321_3p_a_at 1.392719302
1552340_3p_at 2.221288407
1552343_3p_s_at 3.043991381
1552354_3p_at 3.513634509
1552476_3p_s_at 2.405197838
1552480_3p_s_at 1.271905891
1552504_3p_a_at 3.518034936
1552518_3p_s_at 1.094360535
1552528_3p_at 2.597485117
1552535_3p_at 3.723711035
1552566_3p_at 1.765175674
1552575_3p_a_at 3.413379766

Total number of rows: 61359

Table truncated, full table size 1892 Kbytes.




Supplementary file Size Download File type/resource
GSM363937.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap