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Sample GSM35968 Query DataSets for GSM35968
Status Public on Nov 24, 2004
Title RENAL_SNC12C
Sample type RNA
 
Channel 1
Source name Cy5-RENAL_SNC12C
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1360 813 1272 1177 0 2024.3 2628.9 0.377036152803443 1.298671146 0.377036152803443
2 1576 849 1968 352 0 2271.4 2476.9 0.12495383246725 1.090472836 0.12495383246725
3 1336 7774 1248 8312 0 10249.9 8496.8 -0.270618322767139 0.828964185 -0.270618322767139
4 1568 486 2032 -164 0 1859 2064 0.150916200447155 1.110274341 0.150916200447155
5 1408 73 1112 -154 0 1155.1 1228.3 0.0886452131056293 1.063371137 0.0886452131056293
6 1280 2667 968 2118 0 3926.1 3102.4 -0.33971221123721 0.790198925 -0.33971221123721
7 1416 363 1176 165 0 1514.1 1575.6 0.0574408295623209 1.040618189 0.0574408295623209
8 1296 2474 1032 752 0 3579.3 1879 -0.929712400809444 0.524962982 -0.929712400809444
9 1400 21124 1152 27087 0 27546.3 23090.4 -0.254565385228183 0.838239618 -0.254565385228183
10 1296 212 1056 -117 0 1175.8 1204.3 0.034552139643277 1.024238816 0.034552139643277
11 1384 105 1168 30 0 1209.2 1475.2 0.286857676604473 1.219980152 0.286857676604473
12 1304 105 1072 -175 0 1077.4 1173.1 0.122772029803734 1.088824949 0.122772029803734
13 1264 2960 688 5044 0 4479.9 5404.6 0.27072131719864 1.206410857 0.27072131719864
14 1344 157 832 -11 0 1144.3 1077 -0.0874470813357932 0.941186752 -0.0874470813357932
15 1256 4260 680 1887 0 5545.3 2553.5 -1.1187894535774 0.460480046 -1.1187894535774
16 1336 2526 856 3756 0 3963.5 4493.9 0.181193045455496 1.133821118 0.181193045455496
17 1584 4866 2104 2536 0 6913.9 4328.7 -0.675565919427397 0.626086579 -0.675565919427397
18 1240 132 712 86 0 1032 1060.9 0.0398457040993365 1.028003876 0.0398457040993365
19 1536 103 1816 -377 0 1392.5 1693.7 0.282501029727582 1.216301616 0.282501029727582
20 1256 11379 736 37 0 12366.2 789.8 -3.96877107049789 0.063867639 -3.96877107049789

Total number of rows: 9706

Table truncated, full table size 830 Kbytes.




Supplementary data files not provided
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