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Sample GSM35965 Query DataSets for GSM35965
Status Public on Nov 24, 2004
Title RENAL_ACHN
Sample type RNA
 
Channel 1
Source name Cy5-RENAL_ACHN
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 976 1058 936 219 0 1626.4 1444.5 -0.171111915965289 0.888157895 -0.171111915965289
2 1056 1115 928 575 0 1745.8 1869.1 0.0984554656829157 1.070626647 0.0984554656829157
3 952 5369 928 9940 0 5271.9 13030.8 1.30553074793962 2.471746429 1.30553074793962
4 1048 685 928 328 0 1385.6 1570.9 0.18108050964095 1.133732679 0.18108050964095
5 800 165 840 77 0 813 1088.5 0.421014150453806 1.338868389 0.421014150453806
6 968 4381 872 2966 0 4423 4641.5 0.0695658760296399 1.049400859 0.0695658760296399
7 816 793 848 644 0 1286.8 1865.5 0.535774518807642 1.449720236 0.535774518807642
8 1008 2609 888 948 0 2907.3 2284.2 -0.347990972388547 0.785677433 -0.347990972388547
9 832 17979 856 12500 0 16595.2 15139.3 -0.132467515773749 0.912269813 -0.132467515773749
10 984 462 896 250 0 1165.2 1422.2 0.287546754228882 1.220562993 0.287546754228882
11 832 224 856 116 0 879.6 1167 0.407885051726391 1.326739427 0.407885051726391
12 960 172 896 48 0 940.1 1136.6 0.273838488581134 1.209020317 0.273838488581134
13 1176 3591 784 4048 0 3949 5832.9 0.562725972903855 1.477057483 0.562725972903855
14 1320 327 832 145 0 1329.3 1210.5 -0.135063652854206 0.910629655 -0.135063652854206
15 1160 5965 776 4507 0 5923.9 6354.1 0.101140507704637 1.072621077 0.101140507704637
16 1336 2964 848 2948 0 3555.2 4591.2 0.368940557215629 1.29140414 0.368940557215629
17 1016 7563 760 3324 0 7137.7 4908.7 -0.540118267779868 0.68771453 -0.540118267779868
18 1176 368 768 135 0 1257.4 1108.8 -0.181444505319605 0.881819628 -0.181444505319605
19 1024 319 752 131 0 1106.7 1071.5 -0.0466323450078464 0.968193729 -0.0466323450078464
20 1192 10999 776 623 0 10079.1 1692.1 -2.57448008397997 0.167882053 -2.57448008397997

Total number of rows: 9706

Table truncated, full table size 830 Kbytes.




Supplementary data files not provided
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