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Sample GSM356969 Query DataSets for GSM356969
Status Public on Mar 16, 2009
Title Unstimulated Control_replicate1
Sample type RNA
 
Source name AG01518 forskin human fibroblasts
Organism Homo sapiens
Characteristics Normal Fibroblasts
Treatment protocol Cells left untreated for 48h in serum-free medium (control treatment).
Growth protocol Human foreskin fibroblasts (AG01518) were cultured (1.5E6 cells/10 cm dish) in MEM medium with 10% fetal calf serum and glutamine for 24h, then washed and incubated for 47h in serum-free medium. Cells were stimulated for 1h by PDGF-BB (25ng/ml) or b-FGF (10ng/ml, + heparine 50 microg/ml). Alternatively, cells were incubated for 24h in starvation medium and treated for 24h with growth factors, or left untreated for 48h in serum-free medium (control treatment).
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen)
Label Biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description Unstimulated Control
Data processing MAS5 (GCOS) : the scaling factor using all probe sets was set to 100 and the normalization factor was set to 1
 
Submission date Dec 31, 2008
Last update date Mar 16, 2009
Contact name Jean-Baptiste Demoulin
Organization name Université catholique de Louvain
Department de Duve Institute
Lab UCL - MEXP
Street address av Hippocrate 75, B1.74.05
City Brussels
ZIP/Postal code B-1200
Country Belgium
 
Platform ID GPL571
Series (1)
GSE14256 Human fibroblast stimulation with PDGF-BB or b-FGF

Data table header descriptions
ID_REF
VALUE MAS5.0-calculated signal intensities
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the ABS_CALL

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 65.2726 P 0.000662269
AFFX-BioB-M_at 81.5883 P 4.42873e-05
AFFX-BioB-3_at 54.4187 P 5.16732e-05
AFFX-BioC-5_at 203.941 P 4.42873e-05
AFFX-BioC-3_at 262.514 P 4.42873e-05
AFFX-BioDn-5_at 380.272 P 4.42873e-05
AFFX-BioDn-3_at 933.207 P 8.14279e-05
AFFX-CreX-5_at 2096.15 P 5.16732e-05
AFFX-CreX-3_at 2717.13 P 4.42873e-05
AFFX-DapX-5_at 0.85878 A 0.631573
AFFX-DapX-M_at 1.93797 A 0.574038
AFFX-DapX-3_at 0.22832 A 0.987466
AFFX-LysX-5_at 0.156484 A 0.941572
AFFX-LysX-M_at 2.27888 A 0.617401
AFFX-LysX-3_at 1.81406 A 0.239063
AFFX-PheX-5_at 0.343147 A 0.921998
AFFX-PheX-M_at 0.14268 A 0.983338
AFFX-PheX-3_at 4.4363 A 0.0956669
AFFX-ThrX-5_at 0.350742 A 0.945802
AFFX-ThrX-M_at 0.546785 A 0.699394

Total number of rows: 22277

Table truncated, full table size 679 Kbytes.




Supplementary file Size Download File type/resource
GSM356969.CEL.gz 2.0 Mb (ftp)(http) CEL
GSM356969.CHP.gz 122.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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