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Sample GSM356967 Query DataSets for GSM356967
Status Public on Mar 16, 2009
Title b-FGF stimulation for 24h_replicate1
Sample type RNA
 
Source name AG01518 forskin human fibroblasts
Organism Homo sapiens
Characteristics Normal Fibroblasts
Treatment protocol Cells were stimulated for 24h or 1h by PDGF-BB (25 ng/ml) or b-FGF (10 ng/ml + heparine 50 microg/ml)
Growth protocol Human foreskin fibroblasts (AG01518) were cultured (1.5E6 cells/10 cm dish) in MEM medium with 10% fetal calf serum and glutamine for 24h, then washed and incubated for 47h in serum-free medium. Cells were stimulated for 1h by PDGF-BB (25ng/ml) or b-FGF (10ng/ml, + heparine 50 microg/ml). Alternatively, cells were incubated for 24h in starvation medium and treated for 24h with growth factors, or left untreated for 48h in serum-free medium (control treatment).
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen)
Label Biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description 24h b-FGF stimulation
Data processing MAS5 (GCOS) : the scaling factor using all probe sets was set to 100 and the normalization factor was set to 1
 
Submission date Dec 31, 2008
Last update date Mar 16, 2009
Contact name Jean-Baptiste Demoulin
Organization name Université catholique de Louvain
Department de Duve Institute
Lab UCL - MEXP
Street address av Hippocrate 75, B1.74.05
City Brussels
ZIP/Postal code B-1200
Country Belgium
 
Platform ID GPL571
Series (1)
GSE14256 Human fibroblast stimulation with PDGF-BB or b-FGF

Data table header descriptions
ID_REF
VALUE MAS5.0-calculated signal intensities
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the ABS_CALL

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 55.3594 P 0.000662269
AFFX-BioB-M_at 81.069 P 4.42873e-05
AFFX-BioB-3_at 56.8199 P 5.16732e-05
AFFX-BioC-5_at 182.48 P 4.42873e-05
AFFX-BioC-3_at 220.075 P 4.42873e-05
AFFX-BioDn-5_at 376.165 P 4.42873e-05
AFFX-BioDn-3_at 817.661 P 7.00668e-05
AFFX-CreX-5_at 1969.53 P 5.16732e-05
AFFX-CreX-3_at 2312.63 P 4.42873e-05
AFFX-DapX-5_at 0.0850527 A 0.953547
AFFX-DapX-M_at 0.453608 A 0.852061
AFFX-DapX-3_at 1.4661 A 0.659391
AFFX-LysX-5_at 0.158197 A 0.945787
AFFX-LysX-M_at 0.44181 A 0.794268
AFFX-LysX-3_at 0.379978 A 0.440646
AFFX-PheX-5_at 0.240485 A 0.891021
AFFX-PheX-M_at 0.0890255 A 0.994443
AFFX-PheX-3_at 2.56306 A 0.340661
AFFX-ThrX-5_at 0.297112 A 0.574038
AFFX-ThrX-M_at 1.65079 A 0.48511

Total number of rows: 22277

Table truncated, full table size 682 Kbytes.




Supplementary file Size Download File type/resource
GSM356967.CEL.gz 2.0 Mb (ftp)(http) CEL
GSM356967.CHP.gz 440.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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