NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM35402 Query DataSets for GSM35402
Status Public on Nov 24, 2004
Title Control (untrained) vs P6h (6 hours after 12 hours running).
Sample type RNA
 
Channel 1
Source name Total RNA from Control was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from P6h was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description All samples were gathered from mouse skeletal muscle (plantaris). Control total RNAs were extracted from 8 control untrained mice and combined.
All samples were gathered from mouse skeletal muscle (plantaris). Test total RNAs were extracted from 3-5 P6h mice and combined.
 
Submission date Nov 17, 2004
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (1)
GSE2001 Skeletal Muscle Response

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 59619.7 963.346 563 6377.95 564.6 32.9708 63303.5 889.5 472 158.6 474.271 41.1581 -1.98515 0
2 579.96 426.8 545 27.718 546.379 26.7365 579 419 477 32.0858 478.563 35.5948 -0.389982 0
3 560.75 527.167 546 20.6255 550.233 26.7263 561 517.5 502 39.568 502.344 38.2535 0.390689 0
4 541.583 413.292 541 27.0827 547.055 29.5997 544 403 487 39.4136 493.769 39.656 -0.0717404 0
5 571.296 521.481 557 29.2217 561.659 36.7108 564 518 513 55.5603 520.059 44.7991 0.292744 0
6 702.696 465.609 562.5 31.4519 565.557 33.0047 697 473 515 28.8472 515.966 40.1501 -0.483235 0
7 580.741 520 554 49.8109 557.879 30.2331 570 521 494 51.8622 498.473 41.9172 0.228216 0
8 554.08 502.96 559 37.5832 562.447 33.6974 548 495 504 27.399 509.188 46.4093 0.348285 0
9 6980.5 5830.67 551 178.327 554.702 31.5754 6967 5853 485.5 234.327 483.893 29.7123 -0.0306981 -0.101976881
10 1372.31 884.115 547 265.576 551.023 31.9636 1298 886.5 481 146.727 482.391 31.557 -0.210264 -0.698481889
11 558.522 490.609 542 43.944 542.741 27.9811 558 485 475 42.675 474.963 30.959 0.249115 0
12 538.815 459.963 528 26.1799 535.393 28.9578 545 458 470.5 24.7052 468.048 31.3822 0.251243 0
13 539.556 463.407 552.5 26.49 564.595 42.7326 539 463 482 35.8118 486.321 46.3726 0.269589 0
14 1805.81 1355.44 549 152.801 556.736 39.3256 1790 1325 467 136.882 478.402 40.3944 -0.0882144 -0.293041894
15 2189.54 1703.71 559 2305.38 560.253 27.5167 873 736 484 1740.17 485.831 33.3027 -0.0650327 -0.216033953
16 1006.04 931.583 555 230.185 560.126 37.3543 917 849 479 236.377 480.322 34.7297 0.0706711 0.234764313
17 590.75 504.167 560 35.9798 566.212 35.4962 587 505 489 36.8636 493.329 36.5453 0.107095 0
18 666.63 494.778 562.5 43.9468 565.917 32.5847 662 490 491 31.5074 492.25 29.9151 -0.216218 0
19 6837.21 4750.69 554 1198.9 562.824 37.9091 6891 4745 484 851.294 487.956 41.6925 -0.117398 -0.389987714
20 2565.33 2140.89 562 213.282 562.372 35.9231 2535 2136 477.5 160.625 481.988 39.0115 -0.0266119 -0.088402818

Total number of rows: 16273

Table truncated, full table size 1674 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap