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Sample GSM35401 Query DataSets for GSM35401
Status Public on Nov 24, 2004
Title Control (untrained) vs P3h (3 hours after 12 hours running).
Sample type RNA
 
Channel 1
Source name Total RNA from Control was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from P3h was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description All samples were gathered from mouse skeletal muscle (plantaris). Control total RNAs were extracted from 8 control untrained mice and combined.
All samples were gathered from mouse skeletal muscle (plantaris). Test total RNAs were extracted from 3-5 P3h mice and combined.
 
Submission date Nov 17, 2004
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (1)
GSE2001 Skeletal Muscle Response

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 65517.3 65517 2495.94 522.523 520 25.8477 1023.2 984 60.0997 410.318 410.5 21.3472 -1.92312 0
2 545.038 537.5 20.4141 518.871 514 2019.79 375.192 377.5 22.83 411.71 409 37.377 -0.248065 0
3 539.16 539 25.4252 513.859 511 24.4752 439.04 424 16.1979 415.247 412 16.2476 0.128565 0
4 513.846 509.5 17.9159 508.136 509 26.5364 366.654 366 13.9117 408.037 410 28.1567 -0.153691 0
5 513.417 514.5 23.555 514.921 512 20.9359 404.167 405.5 20.769 407.955 403 21.789 0.120579 0
6 662.846 650.5 31.7543 507.552 506 22.3966 405.423 402 17.5436 405.598 404 19.3515 -0.396528 0
7 511.417 508 31.6066 511.47 510 20.8747 407 404.5 20.8264 412.687 409 21.7255 0.149504 0
8 501.923 502.5 15.9711 501.944 498 16.3939 400.538 399.5 20.5283 405.067 401 20.4842 0.187747 0
9 11092.4 11119 220.148 508.578 506 16.2159 11220.6 11202 253.452 408.022 409.5 16.4801 0.0463271 0.153895295
10 1706.21 1531 292.748 497.092 495 16.5989 1720.25 1530 163.113 406.448 405 18.5543 0.0714548 0.237367708
11 485.538 481 21.699 497.902 496 18.0088 383.885 382 15.5114 397.707 393.5 20.7508 0.248166 0
12 492.76 495 14.3487 496.116 495.5 14.0498 383.92 383 17.7411 400 400 20.2464 0.167223 0
13 503.192 504 16.8747 501.73 495 14.2835 396.462 394.5 19.253 408.169 405 16.2414 0.153618 0
14 2590.41 2574 208.57 497.286 494 18.2668 1700.89 1680 162.141 396.89 394 14.0991 -0.163435 -0.542919318
15 1688.52 841 1611.6 497.578 494 21.1173 1381.71 700 1177.43 399.952 398 19.1759 -0.042992 -0.142816333
16 1265.92 1107 272.388 500.306 501 20.902 1200.04 1030 249.437 397.282 396 20.2226 0.0544863 0.180999571
17 599.08 562 34.9965 499.905 496 22.7478 462.64 445 22.8916 397.821 397 16.4156 -0.0130675 0
18 649.958 653 22.8605 503.179 502.5 19.6765 494.458 494 17.4455 402.31 398.5 18.4059 -0.0503261 -0.167179685
19 10250.9 10446 1274.02 501.824 502 26.6878 8111.57 8108 1065.07 403.187 402 18.8461 -0.0642006 -0.213269777
20 3531.46 3463 227.574 506.718 502 20.557 3195.73 3161 181.524 402.071 403 17.0754 -0.000732449 -0.002433143

Total number of rows: 16273

Table truncated, full table size 1722 Kbytes.




Supplementary data files not provided
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