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Sample GSM342998 Query DataSets for GSM342998
Status Public on Oct 22, 2009
Title Control
Sample type RNA
 
Source name human dermal skin fibroblasts
Organism Homo sapiens
Characteristics sham treated human dermal skin fibroblasts.
Human neonatal skin fibroblasts (FB) were obtained from Lifeline Cell Technology; Walkersville, MD and grown in Dulbecco's modified Eagle's medium, Gibco (Gaithersburg, MD) supplemented with 10% fetal calf serum (FCS) and penicillin/ streptomycin (1000U per ml, Gibco) to sub-confluence. Fourth passage FB were used at a confluence of 60-70% in 12-well tissue culture plates.
Extracted molecule total RNA
Extraction protocol Trizol followed by RNeasy Mini kit (Qiagen)
Label biotin
Label protocol According to standard Affymetrix protocol.
 
Hybridization protocol According to standard Affymetrix protocol.
Scan protocol According to standard Affymetrix protocol.
Description No additional information.
Data processing MAS 5.0
 
Submission date Nov 14, 2008
Last update date Oct 22, 2009
Contact name Martin Bilban
E-mail(s) [email protected]
Phone ++43 (0)1 40400 6441
Organization name Medical University of Vienna
Department
Street address
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platform ID GPL570
Series (1)
GSE13606 UV- or oxidized lipid treated dermal skin fibroblasts

Data table header descriptions
ID_REF
VALUE Signal Intensity
ABS_CALL Detection Call
DETECTION P-VALUE Detection Call P-Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1096.8 P 0.000581214
AFFX-BioB-M_at 1390.89 P 4.42873e-05
AFFX-BioB-3_at 841.905 P 4.42873e-05
AFFX-BioC-5_at 2726.97 P 5.16732e-05
AFFX-BioC-3_at 3483.6 P 4.42873e-05
AFFX-BioDn-5_at 5975.83 P 4.42873e-05
AFFX-BioDn-3_at 13073.2 P 6.02111e-05
AFFX-CreX-5_at 27073 P 5.16732e-05
AFFX-CreX-3_at 31790 P 4.42873e-05
AFFX-DapX-5_at 6.78936 A 0.58862
AFFX-DapX-M_at 6.46885 A 0.824672
AFFX-DapX-3_at 5.54416 A 0.868639
AFFX-LysX-5_at 4.45768 A 0.368438
AFFX-LysX-M_at 19.9377 A 0.470241
AFFX-LysX-3_at 13.2287 A 0.185131
AFFX-PheX-5_at 1.72627 A 0.966323
AFFX-PheX-M_at 1.89974 A 0.993129
AFFX-PheX-3_at 40.9912 A 0.48511
AFFX-ThrX-5_at 5.31962 A 0.724854
AFFX-ThrX-M_at 4.90804 A 0.834139

Total number of rows: 54675

Table truncated, full table size 1635 Kbytes.




Supplementary file Size Download File type/resource
GSM342998.CEL.gz 5.3 Mb (ftp)(http) CEL
GSM342998.CHP.gz 294.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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