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Status
Public on Nov 03, 2009
Title
NPC24
Sample type
RNA
Source name
biopsy of undifferentiated NPC
Organism
Homo sapiens Characteristics
disease state: Nasopharyngeal carcinoma
Extracted molecule
total RNA
Extraction protocol
RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
Label
biotin
Label protocol
The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
Hybridization protocol
Affymetrix Standard protocol
Scan protocol
Affymetrix Standard protocol
Description
Stage IVB, T2, N3, M0, G4
Data processing
The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
Submission date
Nov 13, 2008
Last update date
Mar 29, 2010
Contact name
Wenbin Wei
E-mail(s)
[email protected] Organization name
Durham University
Department
Biosciences
Street address
Stockton Road
City
Durham
ZIP/Postal code
DH1 3LE
Country
United Kingdom
Platform ID
GPL96 Series (1)
GSE13597 Expression data from biopsies of Nasopharyngeal carcinoma (NPC) and non-malignant controls
Data table header descriptions ID_REF VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
105.193
P
0.00401721
AFFX-BioB-M_at
171.392
P
0.000445901
AFFX-BioB-3_at
88.3545
P
0.0020226
AFFX-BioC-5_at
407.707
P
0.000126798
AFFX-BioC-3_at
231.875
P
6.02111e-05
AFFX-BioDn-5_at
203.167
P
0.000224668
AFFX-BioDn-3_at
1523.85
P
0.000126798
AFFX-CreX-5_at
3114.15
P
4.42873e-05
AFFX-CreX-3_at
4677.03
P
4.42873e-05
AFFX-DapX-5_at
7.60129
A
0.440646
AFFX-DapX-M_at
9.4244
A
0.313723
AFFX-DapX-3_at
1.53434
A
0.945787
AFFX-LysX-5_at
6.35066
A
0.5
AFFX-LysX-M_at
2.62724
A
0.783476
AFFX-LysX-3_at
4.24405
A
0.41138
AFFX-PheX-5_at
0.859116
A
0.868639
AFFX-PheX-M_at
11.3138
A
0.645547
AFFX-PheX-3_at
7.20875
A
0.544587
AFFX-ThrX-5_at
0.943329
A
0.966323
AFFX-ThrX-M_at
9.44426
A
0.48511
22283 665 Kbytes .Supplementary file Size Download File type/resource GSM342178.CEL.gz
3.2 Mb
(ftp) (http) CEL
GSM342178.CHP.gz
120.8 Kb
(ftp) (http) CHP
Processed data included within Sample table Processed data provided as supplementary file
