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Status
Public on Nov 03, 2009
Title
NPC19
Sample type
RNA
Source name
biopsy of undifferentiated NPC
Organism
Homo sapiens Characteristics
disease state: Nasopharyngeal carcinoma
Extracted molecule
total RNA
Extraction protocol
RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
Label
biotin
Label protocol
The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
Hybridization protocol
Affymetrix Standard protocol
Scan protocol
Affymetrix Standard protocol
Description
Stage IVA, T4, N2b, M0, G4
Data processing
The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
Submission date
Nov 13, 2008
Last update date
Mar 29, 2010
Contact name
Wenbin Wei
E-mail(s)
[email protected] Organization name
Durham University
Department
Biosciences
Street address
Stockton Road
City
Durham
ZIP/Postal code
DH1 3LE
Country
United Kingdom
Platform ID
GPL96 Series (1)
GSE13597 Expression data from biopsies of Nasopharyngeal carcinoma (NPC) and non-malignant controls
Data table header descriptions ID_REF VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
88.9072
P
0.00499819
AFFX-BioB-M_at
144.372
P
0.000581214
AFFX-BioB-3_at
53.7141
P
0.0044838
AFFX-BioC-5_at
245.543
P
0.000146581
AFFX-BioC-3_at
179.557
P
0.000224668
AFFX-BioDn-5_at
200.277
P
0.000340305
AFFX-BioDn-3_at
1159.32
P
8.14279e-05
AFFX-CreX-5_at
2319.87
P
4.42873e-05
AFFX-CreX-3_at
3880.37
P
4.42873e-05
AFFX-DapX-5_at
9.88933
A
0.41138
AFFX-DapX-M_at
13.14
A
0.287743
AFFX-DapX-3_at
1.24251
A
0.981719
AFFX-LysX-5_at
8.83552
A
0.58862
AFFX-LysX-M_at
3.62005
A
0.749204
AFFX-LysX-3_at
2.96268
A
0.227636
AFFX-PheX-5_at
0.622799
A
0.990663
AFFX-PheX-M_at
2.29786
A
0.631562
AFFX-PheX-3_at
23.9546
A
0.205732
AFFX-ThrX-5_at
2.35924
A
0.659339
AFFX-ThrX-M_at
1.01294
A
0.868639
22283 668 Kbytes .Supplementary file Size Download File type/resource GSM342173.CEL.gz
3.0 Mb
(ftp) (http) CEL
GSM342173.CHP.gz
120.7 Kb
(ftp) (http) CHP
Processed data included within Sample table Processed data provided as supplementary file
