|
| Status |
Public on Jun 30, 2009 |
| Title |
01VKE_CTRL |
| Sample type |
RNA |
| |
|
| Source name |
CTRL
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Peripheral blood mononuclear cells
original diagnosis: healthy control
age_at_onset: LT6
ttf: 101min
race: White
sex: Male
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Peripheral blood was drawn and PBMC were isolated over Ficoll. Samples were stored in Trizol at -80oC until extracted according to manufacturer's directions.
|
| Label |
Biotin
|
| Label protocol |
NuGEN Ovation labeling
|
| |
|
| Hybridization protocol |
Standard Affymetrix hybridization protocol
|
| Scan protocol |
Standard scanning
|
| Description |
01VKE_CTRL
|
| Data processing |
Data were imported into GeneSpring 7.3 with RMA preprocessing and normalized to median of all samples. Normalized data were exported and subjected to Distance Weighted Discrimination (DWD) to account for any batch effects then reimported into Gene Spring and analyzed.
|
| |
|
| Submission date |
Nov 06, 2008 |
| Last update date |
Nov 14, 2018 |
| Contact name |
Michael Barnes |
| E-mail(s) |
[email protected]
|
| Phone |
513-636-1319
|
| Organization name |
Cincinnati Childrens Hospital Medical Center
|
| Department |
Rheumatology
|
| Lab |
Dr. David Glass
|
| Street address |
3333 Burnet Ave
|
| City |
Cincinnati |
| State/province |
OH |
| ZIP/Postal code |
45229 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (4)
|
| GSE13501 |
Subtype-specific peripheral blood gene expression profiles in recent onset JIA |
| GSE13849 |
Expression Signatures in Polyarticular JIA Show Heterogeneity and Offer a Molecular Classification of Disease Subsets |
| GSE20307 |
Biological Similarities Exist between Oligoarticular and Polyarticular Subtypes of JIA Based on Age at Onset |
| GSE26554 |
Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13. |
|
| Relations |
| Reanalyzed by |
GSE119087 |
| Reanalyzed by |
GSE122511 |
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