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Sample GSM33916

Query DataSets for GSM33916

Status

Public on Oct 28, 2004

Title

HCC085_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC085

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 42242

Array Print: Hs-OperonV2-vB1.1p8-041403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC085
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.471	1.386	1	1	1	3046	1206	289	337	2514	687	155	141	0
1174364_1	1.030	2.042	1	1	2	8853	2080	311	912	5121	1724	160	391	0
1175152_1	-0.426	0.744	1	1	3	894	391	301	592	1090	319	145	249	0
1175940_1	-0.091	0.939	1	1	4	1234	504	289	167	1348	383	154	164	0
1176716_1	-0.241	0.846	1	1	5	1719	668	311	199	2125	825	152	160	0
1177504_1	0.052	1.037	1	1	6	1490	489	306	197	1509	319	155	109	0
1178580_1	-0.301	0.812	1	1	7	3442	1101	284	187	4759	1634	146	128	0
1179356_1	-0.169	0.889	1	1	8	853	326	316	156	865	305	149	140	0
1180144_1	-1.058	0.480	1	1	9	1398	448	293	175	2873	693	145	97	0
1180932_1	-0.353	0.783	1	1	10	484	259	284	183	458	207	155	103	0
1181708_1	0.246	1.186	1	1	11	635	294	302	160	489	165	156	144	0
1182496_1	0.865	1.821	1	1	12	548	309	313	192	353	159	200	119	0
1183572_1	-0.725	0.605	1	1	13	1773	699	279	176	3072	1392	143	103	0
1184348_1	-0.676	0.626	1	1	14	586	233	283	171	717	316	143	80	0
1185136_1	1.293	2.451	1	1	15	363	199	270	183	190	128	145	100	-50
1185924_1	-0.098	0.934	1	1	16	830	405	288	164	835	357	147	89	0
1186700_1	-0.997	0.501	1	1	17	701	357	281	169	1132	434	138	68	0
1187488_1	-1.037	0.487	1	1	18	490	269	264	209	683	314	133	205	0
1188564_1	-0.743	0.598	1	1	19	5808	1546	279	313	11106	2593	136	459	0
1189340_1	0.043	1.030	1	1	20	1397	575	305	162	1383	317	126	71	0

Total number of rows: 21794

Table truncated, full table size 1386 Kbytes.

Supplementary data files not provided

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