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Sample GSM33897

Query DataSets for GSM33897

Status

Public on Oct 28, 2004

Title

HCC075_Cy5

Sample type

RNA

Channel 1

Source name

HCC075

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 38939

Array Print: Hs-OperonV2-vB1.1p3-013003
Tissue_type: Hepatocellular Carcinoma
Sample: HCC075
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.062	1.044	1	1	1	543	386	139	198	732	395	343	1114	0
1174364_1	0.738	1.668	1	1	2	7123	1753	131	85	4540	1055	328	93	0
1175152_1	-0.057	0.961	1	1	3	866	287	134	79	1076	241	311	94	0
1175940_1	0.348	1.273	1	1	4	1479	284	125	41	1362	231	293	67	0
1176716_1	0.413	1.332	1	1	5	1808	406	126	49	1558	286	289	48	0
1177504_1	0.327	1.254	1	1	6	1655	391	126	51	1522	301	297	50	0
1178580_1	0.309	1.239	1	1	7	3095	495	129	480	2696	459	290	67	0
1179356_1	0.036	1.025	1	1	8	893	208	129	39	1043	268	294	49	0
1180144_1	0.885	1.847	1	1	9	2160	406	123	41	1392	279	284	49	0
1180932_1	-0.214	0.862	1	1	10	443	143	122	38	658	121	284	49	0
1181708_1	-0.214	0.862	1	1	11	572	182	124	59	807	170	285	53	0
1182496_1	-0.293	0.816	1	1	12	471	164	125	47	709	163	283	49	0
1183572_1	0.685	1.608	1	1	13	1993	499	126	61	1456	360	289	59	0
1184348_1	0.150	1.109	1	1	14	615	199	127	95	731	161	289	67	0
1185136_1	0.763	1.697	1	1	15	298	356	124	96	393	245	290	72	-50
1185924_1	0.647	1.566	1	1	16	947	267	124	47	814	173	286	54	0
1186700_1	0.301	1.232	1	1	17	1376	360	122	47	1309	247	286	48	0
1187488_1	0.072	1.051	1	1	18	771	166	115	41	911	188	284	50	0
1188564_1	0.506	1.420	1	1	19	5629	1083	119	41	4184	725	285	50	0
1189340_1	1.293	2.450	1	1	20	2587	688	120	38	1300	375	288	51	0

Total number of rows: 21794

Table truncated, full table size 1341 Kbytes.

Supplementary data files not provided

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